This was the correct answer, thank you! On Thu, Feb 6, 2025 at 00:10 Ivan Krylov <ikry...@disroot.org> wrote:
> В Wed, 5 Feb 2025 19:52:57 -0800 > Zhian Kamvar <zkam...@gmail.com> пишет: > > > Mismatches for methods registered for non-generic: > > is: > > function(object, class2) > > is.genind: > > function(x) > > > > is: > > function(object, class2) > > is.genpop: > > function(x) > > > > sample: > > function(x, size, replace, prob) > > sample.haploGen: > > function(x, n) > > Neither methods::is nor base::sample are S3 generics, so these S3 > method registrations are not needed: > > > https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/NAMESPACE#L50-L51 > > https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/NAMESPACE#L73 > > In other words, calling is(new("genind", ...)) or sample(haploGen(...)) > won't dispatch to is.genind() or sample.haploGen() anyway; these > functions are probably intended to be called by their full names. > > Removing these lines and re-generating NAMESPACE should help: > > > https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/R/basicMethods.R#L546 > > https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/R/basicMethods.R#L553 > > https://github.com/thibautjombart/adegenet/blob/e4874e73f0d39ebdddeca05b7eb1359fab771aaf/R/haploGen.R#L529 > > -- > Best regards, > Ivan > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
