On 17 August 2024 at 17:22, Ivan Krylov via R-package-devel wrote:
| В Fri, 16 Aug 2024 18:53:55 +0000
| anj5x...@nilly.addy.io пишет:
|
| > In the past other packages have failed to build and not only on the
| > intel container see
| >
"https://github.com/SpeakEasy-2/speakeasyR/actions/runs/10202337528/job/28226219457";
| > where several containers failed at the setup-deps step. There is
| > overlap in which package fails (i.e. protGenerics and sparseArray
| > fail in multiple containers but succeed in others while in one
| > container ExperimentHub fails). It seems the only packages failing
| > are from Bioconductor. Assume this is a bioconductor or pak issue.
|
| Could also be an rhub issue, although unlike the igraph problem below,
| I have no idea where to start diagnosing it.
|
| > > > igraph::sample_pref(10)
| > > Error in dyn.load(file, DLLpath = DLLpath, ...) :
| > > unable to load shared object
| > > '/root/R/x86_64-pc-linux-gnu-library/4.5/igraph/libs/igraph.so':
| > > libopenblasp.so.0: cannot open shared object file: No such file or
| > > directory
| >
| > I.e. the same error with building targets. I can raise an issue on
| > rigraph as well.
|
| This is a problem with the binary package used by rhub. If you
| reinstall the source package from CRAN instead of
| https://github.com/r-hub/repos and
| https://github.com/cran/igraph/releases/, it will work, but take much
| more time compiling the package:
|
| options(repos = getOption('repos')['CRAN'])
| install.packages('igraph')
The r2u binaries can offer help here for running on Ubuntu. They are a
'superset' of the same p3m binaries but aim to (and generally manage to)
provide working binaries. I just validated via a Docker container running it:
edd@rob:~$ docker run --rm -ti rocker/r2u:jammy bash
root@64a8b23a9bc7:/# install.r igraph # install.packages() works too
[ ... log of installation of 14 binaries omitted here ... ]
root@64a8b23a9bc7:/# R
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.
> library(igraph)
Attaching package: ‘igraph’
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
>
Best, Dirk
--
dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
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