Short version

I have recently tried to update two of my CRAN packages and I am getting the NOTE from R CMD check --as-cran

Package has help file(s) containing install/render-stage \Sexpr{} expressions but no prebuilt PDF manual.

(It comes on one line in the check.log)

What am I doing wrong?

===================

More details

Both packages have lived successfuly on CRAN for some time but my recent attempts to update lead to the NOTE shown above. I notice that the version currently on CRAN do have in the tarball a directory called build which amongst other thing does contain the package manual. However when I build the updated versions the tarball still contains a build directory but without the manual.

I am using 4.4.1 under Windows 10. I open a command line and do everything from there with R CMD, I do not use any helper package. The help files do not explicitly contain any instance of \Sexpr{} but they do contain macros. Both of them use mathjaxr and Rdpack and one also has some macros written by me. They have been like that for some while. The Rd files are hand-written, I do not use any package to generate documentation.

I notice that R CMD build has an option to turn off the manual but I do not set that and there does not seem to be a turn on option. I have looked at the NEWS for R4.4.0 and 4.4.1 but withou enlightenment. The versions on CRAN were probably generated with R 4.3.3 judgin by the date when I made them.

I know it is only a NOTE but I would like to know why it is happening.

I hope that is enough detail to be helpful but I can expand on any unclear areas.

--
Michael

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