CRAN knows about Bioconductor packages, so add phyloseq to Depends: , Imports:, or Suggests: as appropriate.
These CRAN packages seem to Import phyloseq, for instance > db = available.packages(repos = "https://cloud.R-project.org";) > rownames(db)[grepl("phyloseq", db[,"Imports"])] [1] "adaptiveGPCA" "breakaway" "chem16S" [4] "HTSSIP" "HybridMicrobiomes" "microbial" [7] "MicrobiomeStat" "mixKernel" "SigTree" [10] "SIPmg" "treeDA" From: R-package-devel <r-package-devel-boun...@r-project.org> on behalf of Sharon Bewick <sbew...@clemson.edu> Date: Monday, December 4, 2023 at 6:17 AM To: r-package-devel@r-project.org <r-package-devel@r-project.org> Subject: [R-pkg-devel] I'm trying to include phyloseq as a CRAN package dependency and for the life of me I can't figure it out I had this package included in a previous upload and it didn’t cause errors. However, now it is getting flagged as an error. I’ve included biocViews: phyloseq in the DESCRIPTION file, but that did not help. Unfortunately, I cannot make phyloseq a weak dependency. It can be installed through Bioconductor but not CRAN. Any advice, or examples would be appreciated. I have tried most of the ‘solutions’ I have found online without success. Thanks! Sharon [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
