I hope this is a legitimate question here. I have a package of very
simple functions: https://github.com/cpsyctc/CECPfuns. For the forseeable
future it's really only to stop me constantly having to rewrite
functions I use and it is only also used by probably two or three
colleagues who
also use R and are even less IT/programming/R competent than I am and
are very happy to use my functions.
I hadn't done any work on it for two years but came back to it yesterday
and added a function (getCIforQuantiles). There were warnings about
things that are deprecated now in some of the older functions but
otherwise things seemed OK. However, I got a pkgdown error and warning
after
pushing the updated package to github:
Annotations
1 error and 1 warning
pkgdown
Failed to get R 4.3.1: Failed to get R 4.3.1: Failed to download version
4.3.1: Error: Unexpected HTTP response: 404
r-lib/actions/setup-r@v1 is deprecated.
r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to
use the 'v2' version. Also look at the examples at
https://github.com/r-lib/actions/tree/v2/examples because '@v2'
workflows are much simpler than 'v1' workflows.
So I tweaked
https://github.com/cpsyctc/CECPfuns/blob/main/.github/workflows/pkgdown.yaml
to change
- uses: r-lib/actions/setup-r@v1
to
- uses: r-lib/actions/setup-r@v2
rather optimistically hoping that might make the warning go away.
Today I did some work on the new function (trivial, correcting one
"!is.na(" to the correct "is.na(" !!!). More importantly, I created the
test-getCIforQuantiles.R file for testthat to test the sanity checks and
add three simple output checks.
I built the source package locally, committed the changes and tried to
push the update to github (inside Rstudio) but I get:
>>> /usr/bin/git push origin HEAD:refs/heads/main
To https://github.com/cpsyctc/CECPfuns.git
! [rejected] HEAD -> main (fetch first)
error: failed to push some refs to 'https://github.com/cpsyctc/CECPfuns.git'
hint: Updates were rejected because the remote contains work that you do
hint: not have locally. This is usually caused by another repository pushing
hint: to the same ref. You may want to first integrate the remote changes
hint: (e.g., 'git pull ...') before pushing again.
hint: See the 'Note about fast-forwards' in 'git push --help' for details.
OK. So I try to pull thinking that made sense and that the change to
pkgdown.yaml on github that I made yesterday is the offending change.
However, when I pull (in Rstudio again) I get this:
>>> /usr/bin/git pull
fatal: pack has 6 unresolved deltas
fatal: fetch-pack: invalid index-pack output
I have never felt on top of the complexities of git and github but I'm
clearly way out of my depth. I am hoping someone here can see what
I need to do to get things back in synch and be able to get back to
developing the package.
TIA,
Chris
--
Chris Evans (he/him)
Visiting Professor, UDLA, Quito, Ecuador & Honorary Professor,
University of Roehampton, London, UK.
Work web site: https://www.psyctc.org/psyctc/
CORE site: http://www.coresystemtrust.org.uk/
Personal site: https://www.psyctc.org/pelerinage2016/
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