> Error(s) in re-building vignettes: > ... > --- re-building ‘lvpp.Rmd’ using rmarkdown > Quitting from lines 11-15 (lvpp.Rmd) > Error: processing vignette 'lvpp.Rmd' failed with diagnostics: > The function xfun::isFALSE() will be deprecated in the future. Please >consider using base::isFALSE(x) or identical(x, FALSE) instead. > --- failed re-building ‘lvpp.Rmd’
The error message means a function (knitr::opts_chunk$set) called xfun::isFALSE() in lines 11-15 (lvpp.Rmd). However, knitr::opts_chunk$set stopped using xfun::isFALSE(). See the commit shown below. https://github.com/yihui/knitr/commit/ccb07c4c2266666f7375e5df242103672bd629ac Updating knitr package should fix the error. I tested your package on my Ubuntu machine and got no error even after removing vignettes from .Rbuildignore. I believe the cause of the error is not your package but your environment. Best, Shota Ochi 2023年4月2日(日) 6:44 Duncan Murdoch <murdoch.dun...@gmail.com>: > The error message seems pretty clear: "The function xfun::isFALSE() > will be deprecated in the future. Please consider using base::isFALSE(x) > or identical(x, FALSE) instead". > > So don't use xfun::isFALSE(). > > Duncan Murdoch > > > > On 31/03/2023 5:01 p.m., Deepankar Basu wrote: > > Hello All, > > > > I am in the process of developing an R package ( > > https://github.com/dbasu-umass/clptheory) and have encountered problems > > with the vignette. > > > > I had initially been able to build the vignette but *after *I added a new > > function to my package, I have been getting the error message that > > "Vignette rebuilding failed" when I use devtools:check(). > > > > If I use devtools:check(vignette=FALSE), there are no error messages. I > can > > also compile the vignette with knitr. > > > > Below is the output from devtools:check(vignette=FALSE) > >> devtools::check(vignettes = FALSE) > > ══ Documenting > > > ═════════════════════════════════════════════════════════════════════════════════════════════ > > ℹ Updating clptheory documentation > > ℹ Loading clptheory > > > > ══ Building > > > ════════════════════════════════════════════════════════════════════════════════════════════════ > > Setting env vars: > > • CFLAGS : -Wall -pedantic -fdiagnostics-color=always > > • CXXFLAGS : -Wall -pedantic -fdiagnostics-color=always > > • CXX11FLAGS: -Wall -pedantic -fdiagnostics-color=always > > • CXX14FLAGS: -Wall -pedantic -fdiagnostics-color=always > > • CXX17FLAGS: -Wall -pedantic -fdiagnostics-color=always > > • CXX20FLAGS: -Wall -pedantic -fdiagnostics-color=always > > ── R CMD build > > > ───────────────────────────────────────────────────────────────────────────────────────────── > > ✔ checking for file ‘/home/basu15/MyRProjects/clptheory/DESCRIPTION’ ... > > ─ preparing ‘clptheory’: > > ✔ checking DESCRIPTION meta-information ... > > ─ checking for LF line-endings in source and make files and shell > scripts > > ─ checking for empty or unneeded directories > > ─ building ‘clptheory_0.0.0.9000.tar.gz’ > > > > ══ Checking > > > ════════════════════════════════════════════════════════════════════════════════════════════════ > > Setting env vars: > > • _R_CHECK_CRAN_INCOMING_USE_ASPELL_ : TRUE > > • _R_CHECK_CRAN_INCOMING_REMOTE_ : FALSE > > • _R_CHECK_CRAN_INCOMING_ : FALSE > > • _R_CHECK_FORCE_SUGGESTS_ : FALSE > > • _R_CHECK_PACKAGES_USED_IGNORE_UNUSED_IMPORTS_: FALSE > > • NOT_CRAN : true > > ── R CMD check > > > ───────────────────────────────────────────────────────────────────────────────────────────── > > ─ using log directory > ‘/tmp/RtmpCSbZbZ/file3f721a56f9d0/clptheory.Rcheck’ > > ─ using R version 4.2.3 (2023-03-15) > > ─ using platform: x86_64-pc-linux-gnu (64-bit) > > ─ using session charset: UTF-8 > > ─ using options ‘--no-manual --ignore-vignettes --as-cran’ > > ✔ checking for file ‘clptheory/DESCRIPTION’ > > ─ this is package ‘clptheory’ version ‘0.0.0.9000’ > > ─ package encoding: UTF-8 > > ✔ checking package namespace information > > ✔ checking package dependencies (2.5s) > > ✔ checking if this is a source package ... > > ✔ checking if there is a namespace > > ✔ checking for executable files ... > > ✔ checking for hidden files and directories ... > > ✔ checking for portable file names > > ✔ checking for sufficient/correct file permissions > > ✔ checking serialization versions ... > > ✔ checking whether package ‘clptheory’ can be installed (7.1s) > > ✔ checking installed package size > > ✔ checking package directory ... > > ✔ checking for future file timestamps ... > > ✔ checking DESCRIPTION meta-information ... > > ✔ checking top-level files ... > > ✔ checking for left-over files > > ✔ checking index information > > ✔ checking package subdirectories ... > > ✔ checking R files for non-ASCII characters ... > > ✔ checking R files for syntax errors ... > > ✔ checking whether the package can be loaded (1.8s) > > ✔ checking whether the package can be loaded with stated dependencies > > (1.6s) > > ✔ checking whether the package can be unloaded cleanly (1.6s) > > ✔ checking whether the namespace can be loaded with stated dependencies > > (1.6s) > > ✔ checking whether the namespace can be unloaded cleanly (1.8s) > > ✔ checking loading without being on the library search path (1.8s) > > ✔ checking dependencies in R code (1.7s) > > ✔ checking S3 generic/method consistency (2.4s) > > ✔ checking replacement functions (1.7s) > > ✔ checking foreign function calls (1.7s) > > ✔ checking R code for possible problems (9.5s) > > ✔ checking Rd files ... > > ✔ checking Rd metadata ... > > ✔ checking Rd line widths ... > > ✔ checking Rd cross-references ... > > ✔ checking for missing documentation entries (1.7s) > > ✔ checking for code/documentation mismatches (5.1s) > > ✔ checking Rd \usage sections (2.5s) > > ✔ checking Rd contents ... > > ✔ checking for unstated dependencies in examples ... > > ✔ checking contents of ‘data’ directory ... > > ✔ checking data for non-ASCII characters (413ms) > > ✔ checking LazyData > > ✔ checking data for ASCII and uncompressed saves ... > > ─ checking files in ‘vignettes’ ... SKIPPED > > ✔ checking examples (4.9s) > > ✔ checking for non-standard things in the check directory > > ✔ checking for detritus in the temp directory > > > > > > ── R CMD check results > > ─────────────────────────────────────────────────────────── clptheory > > 0.0.0.9000 ──── > > Duration: 55.1s > > > > 0 errors ✔ | 0 warnings ✔ | 0 notes ✔ > > > > Below is the output form devtools:check() > > > >> devtools::check() > > ══ Documenting > > > ═════════════════════════════════════════════════════════════════════════════════════════════ > > ℹ Updating clptheory documentation > > ℹ Loading clptheory > > > > ══ Building > > > ════════════════════════════════════════════════════════════════════════════════════════════════ > > Setting env vars: > > • CFLAGS : -Wall -pedantic -fdiagnostics-color=always > > • CXXFLAGS : -Wall -pedantic -fdiagnostics-color=always > > • CXX11FLAGS: -Wall -pedantic -fdiagnostics-color=always > > • CXX14FLAGS: -Wall -pedantic -fdiagnostics-color=always > > • CXX17FLAGS: -Wall -pedantic -fdiagnostics-color=always > > • CXX20FLAGS: -Wall -pedantic -fdiagnostics-color=always > > ── R CMD build > > > ───────────────────────────────────────────────────────────────────────────────────────────── > > ✔ checking for file ‘/home/basu15/MyRProjects/clptheory/DESCRIPTION’ ... > > ─ preparing ‘clptheory’: > > ✔ checking DESCRIPTION meta-information ... > > ─ installing the package to build vignettes > > ✔ creating vignettes (9.9s) > > ─ checking for LF line-endings in source and make files and shell > scripts > > ─ checking for empty or unneeded directories > > ─ building ‘clptheory_0.0.0.9000.tar.gz’ > > > > ══ Checking > > > ════════════════════════════════════════════════════════════════════════════════════════════════ > > Setting env vars: > > • _R_CHECK_CRAN_INCOMING_USE_ASPELL_ : TRUE > > • _R_CHECK_CRAN_INCOMING_REMOTE_ : FALSE > > • _R_CHECK_CRAN_INCOMING_ : FALSE > > • _R_CHECK_FORCE_SUGGESTS_ : FALSE > > • _R_CHECK_PACKAGES_USED_IGNORE_UNUSED_IMPORTS_: FALSE > > • NOT_CRAN : true > > ── R CMD check > > > ───────────────────────────────────────────────────────────────────────────────────────────── > > ─ using log directory > ‘/tmp/RtmpCSbZbZ/file3f72577bb739/clptheory.Rcheck’ > > ─ using R version 4.2.3 (2023-03-15) > > ─ using platform: x86_64-pc-linux-gnu (64-bit) > > ─ using session charset: UTF-8 > > ─ using options ‘--no-manual --as-cran’ > > ✔ checking for file ‘clptheory/DESCRIPTION’ > > ─ this is package ‘clptheory’ version ‘0.0.0.9000’ > > ─ package encoding: UTF-8 > > ✔ checking package namespace information > > ✔ checking package dependencies (2.9s) > > ✔ checking if this is a source package ... > > ✔ checking if there is a namespace > > ✔ checking for executable files ... > > ✔ checking for hidden files and directories ... > > ✔ checking for portable file names > > ✔ checking for sufficient/correct file permissions > > ✔ checking serialization versions ... > > ✔ checking whether package ‘clptheory’ can be installed (7.6s) > > ✔ checking installed package size ... > > ✔ checking package directory > > ✔ checking for future file timestamps ... > > ✔ checking ‘build’ directory ... > > ✔ checking DESCRIPTION meta-information ... > > ✔ checking top-level files ... > > ✔ checking for left-over files > > ✔ checking index information ... > > ✔ checking package subdirectories ... > > ✔ checking R files for non-ASCII characters ... > > ✔ checking R files for syntax errors ... > > ✔ checking whether the package can be loaded (2s) > > ✔ checking whether the package can be loaded with stated dependencies > > (1.8s) > > ✔ checking whether the package can be unloaded cleanly (1.7s) > > ✔ checking whether the namespace can be loaded with stated dependencies > > (1.8s) > > ✔ checking whether the namespace can be unloaded cleanly (1.8s) > > ✔ checking loading without being on the library search path (1.8s) > > ✔ checking dependencies in R code (1.7s) > > ✔ checking S3 generic/method consistency (2.3s) > > ✔ checking replacement functions (1.6s) > > ✔ checking foreign function calls (1.7s) > > ✔ checking R code for possible problems (10s) > > ✔ checking Rd files (367ms) > > ✔ checking Rd metadata ... > > ✔ checking Rd line widths ... > > ✔ checking Rd cross-references ... > > ✔ checking for missing documentation entries (2.1s) > > ✔ checking for code/documentation mismatches (8.9s) > > ✔ checking Rd \usage sections (3.3s) > > ✔ checking Rd contents ... > > ✔ checking for unstated dependencies in examples ... > > ✔ checking contents of ‘data’ directory (335ms) > > ✔ checking data for non-ASCII characters (584ms) > > ✔ checking LazyData > > ✔ checking data for ASCII and uncompressed saves (535ms) > > ✔ checking installed files from ‘inst/doc’ > > ✔ checking files in ‘vignettes’ > > ✔ checking examples (6.9s) > > ✔ checking for unstated dependencies in vignettes ... > > ✔ checking package vignettes in ‘inst/doc’ > > E checking re-building of vignette outputs (594ms) > > Error(s) in re-building vignettes: > > ... > > --- re-building ‘lvpp.Rmd’ using rmarkdown > > Quitting from lines 11-15 (lvpp.Rmd) > > Error: processing vignette 'lvpp.Rmd' failed with diagnostics: > > The function xfun::isFALSE() will be deprecated in the future. Please > > consider using base::isFALSE(x) or identical(x, FALSE) instead. > > --- failed re-building ‘lvpp.Rmd’ > > > > SUMMARY: processing the following file failed: > > ‘lvpp.Rmd’ > > > > Error: Vignette re-building failed. > > Execution halted > > > > ✔ checking for non-standard things in the check directory > > ✔ checking for detritus in the temp directory > > > > See > > ‘/tmp/RtmpCSbZbZ/file3f72577bb739/clptheory.Rcheck/00check.log’ > > for details. > > > > > > ── R CMD check results > > ─────────────────────────────────────────────────────────── clptheory > > 0.0.0.9000 ──── > > Duration: 1m 6.2s > > > > ❯ checking re-building of vignette outputs ... ERROR > > Error(s) in re-building vignettes: > > ... > > --- re-building ‘lvpp.Rmd’ using rmarkdown > > Quitting from lines 11-15 (lvpp.Rmd) > > Error: processing vignette 'lvpp.Rmd' failed with diagnostics: > > The function xfun::isFALSE() will be deprecated in the future. Please > > consider using base::isFALSE(x) or identical(x, FALSE) instead. > > --- failed re-building ‘lvpp.Rmd’ > > > > SUMMARY: processing the following file failed: > > ‘lvpp.Rmd’ > > > > Error: Vignette re-building failed. > > Execution halted > > > > 1 error ✖ | 0 warnings ✔ | 0 notes ✔ > > > > My package is available here: https://github.com/dbasu-umass/clptheory > > > > Any help will be appreciated. (I found a few pages like this > > <https://github.com/r-lib/devtools/issues/2140> on this problem but the > > issue does not seem to have been resolved). > > > > Thank you. > > DB > > > > > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
