Hi Sanjeev,
I do not think that R cares what name your data file has, only what name the
object inside has. In your case you are documenting sample_chr21_vcf while R
sees the object inside, vcf_data. In other words, you have documented something
that is not included and not documented something that is included.
I prefer having the same name for the data file and the object inside to avoid
confusion.
Best regards,
Kristian
Fra: R-package-devel <r-package-devel-boun...@r-project.org> p� vegne av
Sanjeev Sariya <sanjeevsar...@gmail.com>
Dato: torsdag, 22. desember 2022 kl. 07:57
Til: r-package-devel@r-project.org <r-package-devel@r-project.org>
Emne: [R-pkg-devel] warning about object name and object not being used
Hi there,
I get two warnings:
1)
I created a .rda file from a file. The file was read in a variable as
vcf_data.
Warning:
Undocumented code objects:
'vcf_data'
Undocumented data sets:
'vcf_data'
I created object as:
vcf_data <- vcfR::read.vcfR("sample_chr21.vcf", verbose=TRUE)
save(*vcf_data*, file='data/sample_chr21_vcf.rda')
I've a sample_chr21_vcf.Rd file in the man folder.
How do I fix the warning about the variable name that was used to save
a .rda file?
2)
* checking for code/documentation mismatches ... WARNING
Variables with usage in documentation object �sample_chr21_vcf� but not in code:
�sample_chr21_vcf�
I do not use this vcf file anywhere, not in any example.
Github link:
https://github.com/sariya/GARCOM/tree/new_test_hello
Log link
https://win-builder.r-project.org/incoming_pretest/GARCOM_1.2.2_20221222_073525/Debian/00check.log
--
Sanjeev M
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