Thanks. Yes, that is what I figured out last night. I believe the problem is actually coming from rerddap, not rerddapXtracto - which as I said creates a tempdir on first call. I am submitting a new version of rerddap today, as well as a new version of rerddapXtracto in the next few days. I will look at hoardr and see if I can take it over. I know hoardr uses R6 methods, of which I know nothing, maintaining it may be over my capabilities, but I will give it a look.
I really appreciate the help several people have given me. This is the best of what help-lists are suppose to be about. -Roy PS - If a do take over hoardr, what is the process for becoming the new maintainer of a CRAN package > On Dec 11, 2022, at 3:45 AM, Ivan Krylov <krylov.r...@gmail.com> wrote: > > On Sat, 10 Dec 2022 14:00:22 -0800 > Roy Mendelssohn - NOAA Federal via R-package-devel > <r-package-devel@r-project.org> wrote: > >> CRAN has sent me a notice about the following: >> >> https://www.stats.ox.ac.uk/pub/bdr/donttest/rerddapXtracto.out >> >> I can not reproduce it. I test on my Mac, the cache space is >> properly handled (by a package outside mine). Same with Debian on >> r-hub. I installed Fedora on a virtual machine, no problem (it is >> assigned a space in /tmp). > > I've trace()d rerddap:::gen_key to notify me when a file with the cache > key of 4f8f83808465a7f7619285e9871747af is being downloaded. Since > digest::digest defaults to serialize = TRUE, this should only work with > R-to-be-4.3.0 (I compiled R-devel r83400, same as in the failed check): > > library(rerddapXtracto) > trace( > rerddap:::gen_key, > quote({ > if(digest::digest(ky) == '4f8f83808465a7f7619285e9871747af') { > cat('\n\nFound a match\n\n') > str(url); str(args); print(ky); str(digest::digest(ky)) > message('\n\nFound a match\n\n') > } > }), > at = 3 > ) > example(rxtracto) > example(rxtracto_3D) > example(rxtractogon) > > Surprisingly, there were no hits. I also tried copying and pasting all > code from the vignette and even uncommenting the code marked as > \dontrun{}, also with no results. > > The code that actually creates these files lives in the rerddap > package. The page at > <https://www.stats.ox.ac.uk/pub/bdr/Rconfig/r-devel-linux-x86_64-fedora-gcc> > says that packages are checked in parallel. What if an unlucky reverse > dependency of rerddap was being checked at the same time as your > package, making rerddapXtracto get its NOTE? > > I cleaned ~/.cache/R, put the rerddap source package in a directory and > ran: > > (res <- tools::check_packages_in_dir( > '.', check_args = '--run-donttest', reverse = list(recursive = TRUE), > check_env = c( > "_R_CHECK_DONTTEST_EXAMPLES_=true", > "_R_CHECK_THINGS_IN_OTHER_DIRS_=true" > ) > )) > > I got a NOTE for plotdap! > > * checking for new files in some other directories ... NOTE > Found the following files/directories: > ‘~/.cache/R’ ‘~/.cache/R/rerddap’ > ‘~/.cache/R/rerddap/1b43b4335f06b318b914ba2cc2f88872.nc’ > ‘~/.cache/R/rerddap/4f8f83808465a7f7619285e9871747af.nc’ > ‘~/.cache/R/rerddap/8cb244e059b86865b7933a3d9b72fe16.csv’ > > Looking at the examples for plotdap::add_griddap and > plotdap::add_tabledap, I think that they may be responsible for the > NOTE, because there's no pre-example cache setup and teardown. I also > finally got a match from my tracing code by running > example(add_griddap). > > There's more than one way to do it right; my favourite would be to wrap > the pre-example code and post-example code in \dontshow{}, changing the > cache settings in the first block and restoring them in the second one. > Everywhere else I would use on.exit(), but examples are special in > their relationship with autoprinting and crashing there being > disallowed, making this approach feasible. > > -- > Best regards, > Ivan ********************** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ********************** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center ***Note new street address*** 110 McAllister Way Santa Cruz, CA 95060 Phone: (831)-420-3666 Fax: (831) 420-3980 e-mail: roy.mendelss...@noaa.gov www: https://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
