Hello all,

Our package did not pass the automagical checks when submitted to CRAN. We 
think the rejection is a false positive, so we �reply-all to that message and 
explain� as following the official instruction. We provided explanation for all 
notes in that email (replied to 
cran-submissi...@r-project.org<mailto:cran-submissi...@r-project.org>) but did 
not receive any message after 9 days.

I am looking for suggestions on what to do in this case: should we continue 
waiting for CRAN team�s reply? Or is it necessary to eliminate those notes and 
then submit the package again?

Below are the notes from CRAN teams' auto-check service and our explanation 
send to CRAN team:

>Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
>Check: CRAN incoming feasibility, Result: NOTE
> Maintainer: 'Arindam RoyChoudhury 
> <arr2...@med.cornell.edu<mailto:arr2...@med.cornell.edu>>'

>  New submission

>  Possibly misspelled words in DESCRIPTION:
>    Peng (17:5)
>    Phylogenetics (17:32)
>   al (17:13)
>    et (17:10)

> Size of tarball: 14208488 bytes

Explain:  This is a new submission. These words are not misspelled.

>Flavor: r-devel-windows-x86_64
>Check: examples, Result: NOTE
>  Examples with CPU (user + system) or elapsed time > 10s
>       user system elapsed
>  RDM 40.05   0.89   40.94

Explain:  This is because a large dataset is used in the example. An example 
with large dataset is necessary, as this package is meant for analyzing large 
datasets.


>Flavor: r-devel-linux-x86_64-debian-gcc
>Check: examples, Result: NOTE
> Examples with CPU (user + system) or elapsed time > 5s
>      user system elapsed
>  RDM 24.399  0.888  25.289

Explain:  This is because a large dataset is used in the example. An example 
with large dataset is necessary, as this package is meant for analyzing large 
datasets.

Any suggestions or comments would be appreciated. Thank you in advance!

Best,
Ying



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