You could install VirtualBox if you wanted to test it yourself, or if you have the tarball available online somewhere, I can try building it.
On Wed., Oct. 19, 2022, 19:57 Vincent Plagnol, <vincent.plag...@gmail.com> wrote: > Dear all at R-package-devel, > > I am struggling with a R package build. > It builds fine on my mac, which is my usual work environment. But when I > submit to CRAN, while the windows version is fine, the debian version fails > with a cryptic message: > > > > > > > > > > > > > > > ** installing *source* package ‘ExomeDepth’ ...** using staged > installation** libsg++-12 -std=gnu++14 -I"/home/hornik/tmp/R/include" > -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT > -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c > CNV_estimate.cpp -o CNV_estimate.ogcc-12 -I"/home/hornik/tmp/R/include" > -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT > -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic > -mtune=native -c ExomeDepth_init.c -o ExomeDepth_init.ogcc-12 > -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include > -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall > -Wstrict-prototypes -pedantic -mtune=native -c VP_gamma.c -o VP_gamma.oIn > file included from gsl_math.h:22, from > VP_gamma.c:23:/usr/include/x86_64-linux-gnu/bits/mathcalls.h:85:1: error: > expected ‘;’ before ‘extern’ 85 | __MATHCALL_VEC (acosh,, (_Mdouble_ > __x)); | > ^~~~~~~~~~~~~~/usr/include/x86_64-linux-gnu/bits/mathcalls.h:87:1: error: > expected ‘;’ before ‘extern’ 87 | __MATHCALL_VEC (asinh,, (_Mdouble_ > __x)); | ^~~~~~~~~~~~~~* > > > It is painful to debug because I don't have a debian machine. Furthermore > the issue seems to be in the file called at line 22 of gsl_math.sh which is > #include <math.h> > These are rather arcane (to me) building blocks of C and I don't get why it > would suddenly create some issue on Debian (but not on mac or windows). > > My issue is perhaps that I copied substantial amount of the GSL library (as > opposed to using it as dependency) but it would be painful to do otherwise > now (this is an old package that has started to complain only recently). > > Any and all advice is welcome to help me interpret what I see here. > > Thanks, > > Vincent > > [[alternative HTML version deleted]] > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
