Likewise: secr now passes on Winbuilder for R-release. Thanks Murray ________________________________________ From: Gianmarco Alberti <gianmarcoalbe...@gmail.com> Sent: 08 July 2021 08:21 To: r-package-devel@r-project.org Cc: Murray Efford; Duncan Murdoch; Alex Chubaty; Uwe Ligges Subject: Re: [R-pkg-devel] package test returns error when R version 4.1.0
Dear All, Thanks for the useful discussion. After Uwe’s prompt, I have tested the package again, and everything is fine now. Was it a CRAN issue? Whatever the issue was, I am glad my new version is bound to be on CRAN soon (I have just submitted it). Best Gianmarco ************************************************ Dr Gianmarco Alberti (PhD Udine) Lecturer in Spatial Forensics Coordinator of the BA dissertations Department of Criminology Faculty for Social Wellbeing Room 332, Humanities B (FEMA) University of Malta, Msida, Malta (Europe) - MSD 2080 tel +356 2340 3718 Academic profiles https://www.researchgate.net/profile/Gianmarco_Alberti4<https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.researchgate.net%2Fprofile%2FGianmarco_Alberti4&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7Cc4dbf78cce0a48d0d11708d94184c644%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612862130923706%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=h8Vd1hD4UYCABtO2KXooCaVJ20XkNPizQUisles3WG4%3D&reserved=0> https://malta.academia.edu/GianmarcoAlberti<https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fmalta.academia.edu%2FGianmarcoAlberti&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7Cc4dbf78cce0a48d0d11708d94184c644%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612862130933658%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=zts7AUM0HDuFCDEIY8bKnZ9gtW2XNlsc%2FmGyRpldKc4%3D&reserved=0> Google Scholar profile https://scholar.google.com/citations?user=tFrJKQ0AAAAJ&hl=en<https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fscholar.google.com%2Fcitations%3Fuser%3DtFrJKQ0AAAAJ%26hl%3Den&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7Cc4dbf78cce0a48d0d11708d94184c644%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612862130933658%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=1EFXaEOiQUnYxmyH3YXpeY7UnxJmJIlNs4J4kyYLkfs%3D&reserved=0> Correspondence Analysis website http://cainarchaeology.weebly.com/<https://apc01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fcainarchaeology.weebly.com%2F&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7Cc4dbf78cce0a48d0d11708d94184c644%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612862130933658%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=CsvmSG6H6Hdo32dt95ylIXFJL80zBFKpwp8Jck5awns%3D&reserved=0> R packages on CRAN: CAinterprTools https://cran.r-project.org/web/packages/CAinterprTools/index.html<https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2FCAinterprTools%2Findex.html&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7Cc4dbf78cce0a48d0d11708d94184c644%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612862130943618%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=LAeqHw6HR8j99IxLlt142lRP9Zr0OHvQuaRSMgE6tz4%3D&reserved=0> GmAMisc https://cran.r-project.org/package=GmAMisc<https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fpackage%3DGmAMisc&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7Cc4dbf78cce0a48d0d11708d94184c644%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612862130943618%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=0g8Doj4UduPhPihoTd0M5i8UkHEAu526hW8bw%2FLqW2A%3D&reserved=0> movecost https://cran.r-project.org/web/packages/movecost/index.html<https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2Fmovecost%2Findex.html&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7Cc4dbf78cce0a48d0d11708d94184c644%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612862130953573%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=NTlgzW0PBh7RvbhNWb9ZCWsUG8Fh2NcVIqX%2Flta9%2FJ4%3D&reserved=0> ************************************************ On 7 Jul 2021, 16:47 +0200, Uwe Ligges <lig...@statistik.tu-dortmund.de>, wrote: Can you pls try again now. Best, Uwe Ligges On 06.07.2021 23:18, Murray Efford wrote: I also get from Winbuilder: ** byte-compile and prepare package for lazy loading ERROR: lazy loading failed for package 'secr' even for the tar.gz of the version secr 4.4.4 that currently passes all checks on CRAN. Perhaps it is significant that secr also imports from raster that had a new version on CRAN 18th June. Murray Efford ________________________________________ From: R-package-devel <r-package-devel-boun...@r-project.org> on behalf of Duncan Murdoch <murdoch.dun...@gmail.com> Sent: 07 July 2021 08:28 To: Alex Chubaty Cc: r-package-devel@r-project.org Subject: Re: [R-pkg-devel] package test returns error when R version 4.1.0 On 06/07/2021 4:15 p.m., Alex Chubaty wrote: Thanks for the suggestion Duncan. The same code version ran on winbuilder last week, but it's broken this week. If that happened with a released version of R, then it could be that some new package version is causing the problem, or it could be a transient problem on Winbuilder. Devel versions of R change every day, so there are more possibilities for origins of the problem there. Duncan Murdoch I'll compare the dependencies between the two packages and focus on those used by both for now, to see if it's caused by a broken dependency. Alex On Tue, Jul 6, 2021 at 2:08 PM Duncan Murdoch <murdoch.dun...@gmail.com <mailto:murdoch.dun...@gmail.com>> wrote: Both NegLogoR and movecost have a lot of hard dependencies -- so many that I'm unwilling to install them with the limited bandwidth that I have right now. I suspect that's related to the problem: some dependency install is failing, and that causes something else to fail, and that leads to the not-very-informative failure messages. This kind of problem is quite a lot of work to debug. If I were going to attempt to do it, I would go for a bisection strategy: - Do you have any old revision which succeeds? If so, use bisection on the revisions until you find the change which first triggers the error. - Perhaps no versions succeed, because something external to your package has triggered the error. In this case, bisection would work on the dependencies: cut out half of the dependencies and all the code that depends on those. Have you fixed the error? If so, add back half of the dependencies, otherwise cut out half of the remaining ones. - If you're still getting the errors after cutting out all of the dependencies, then start cutting out code and data. Etc. In any case, try to find a version of the package that doesn't trigger the error, and a minimal change to it that does. Then perhaps you'll understand the root cause of the error. Duncan Murdoch On 06/07/2021 3:11 p.m., Alex Chubaty wrote: FWIW I'm having the same issue with package NetLogoR ( https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FPredictiveEcology%2FNetLogoR%2F&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078338060%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=5XPRhpw3sUyHbOiiupslC%2BZ0pCxcvNekFmWzmZkQPig%3D&reserved=0 <https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2FPredictiveEcology%2FNetLogoR%2F&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=faXwrXOP1RHKEsPrqjmOhg4O8MWayRou6%2B1Y%2BPIj%2FuY%3D&reserved=0>) Passing windows tests locally but code can't be lazy loaded on winbuilder, except for oldrel. Alex On Tue, Jul 6, 2021 at 10:18 AM Gianmarco Alberti < gianmarcoalbe...@gmail.com <mailto:gianmarcoalbe...@gmail.com>> wrote: Thank you all. I appreciate your help and discussion so far. To complicate the matter further, I have done an experiment. I have tried to test a new version which is 99.9% identical to the last official one on CRAN because I wanted to understand if the issue was with some new code added to the version I have been testing in the last couple of days. The new version 1.2 (virtually identical to the 1.1 on CRAN) did not pass the tests as per my earlier description. Same errors. The only Ok is on my computer and with devtools’ winoldrealeases() I really don’t know that to do next. Best Gm ************************************************ Dr Gianmarco Alberti (PhD Udine) Lecturer in Spatial Forensics Coordinator of the BA dissertations Department of Criminology Faculty for Social Wellbeing Room 332, Humanities B (FEMA) University of Malta, Msida, Malta (Europe) - MSD 2080 tel +356 2340 3718 Academic profiles https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.researchgate.net%2Fprofile%2FGianmarco_Alberti4&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=03qtEfvqo6lqgqCe7QRBIOLM%2BSHSNDAEFqOwPT25pnc%3D&reserved=0 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<https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2FCAinterprTools%2Findex.html&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=DkyH2A6ZVY4BAwEw%2BxVxEp6xVCN1fZWvxKqH7nR3OFI%3D&reserved=0> GmAMisc https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fpackage%3DGmAMisc&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=SKhC8DWY62W2hmb%2BSSnu7yQ49ysHRKW1o6M1DXq3XeU%3D&reserved=0 <https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fpackage%3DGmAMisc&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=SKhC8DWY62W2hmb%2BSSnu7yQ49ysHRKW1o6M1DXq3XeU%3D&reserved=0> movecost https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2Fmovecost%2Findex.html&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=ZoZci%2FxGKJPeWZsLFfjR5wC0nlqKMc4BUguMRoKdctI%3D&reserved=0 <https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fweb%2Fpackages%2Fmovecost%2Findex.html&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=ZoZci%2FxGKJPeWZsLFfjR5wC0nlqKMc4BUguMRoKdctI%3D&reserved=0> ************************************************ Il 6 lug 2021, 14:53 +0200, brodie gaslam via R-package-devel < r-package-devel@r-project.org <mailto:r-package-devel@r-project.org>>, ha scritto: On Tuesday, July 6, 2021, 8:09:18 AM EDT, dbosa...@gmail.com <mailto:dbosa...@gmail.com> < dbosa...@gmail.com <mailto:dbosa...@gmail.com>> wrote: Martin: What I suggested was he remove the LazyData entry from the description file if he was NOT lazy loading data. If someone is lazy loading data, then that is a different situation, and they obviously need to set the entry. But clearly Gm has a different problem. He has now tried "LazyData: true", "LazyData: false", and removing the LazyData entry entirely. And he is still getting this error: * installing *source* package 'movecost' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ERROR: lazy loading failed for package 'movecost' * removing 'd:/RCompile/CRANguest/R-release/lib/movecost' FWIW I think this is lazy loading of the code, which I think is different to what LazyData controls. This is described in R-Internals: https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fdoc%2Fmanuals%2FR-ints.html%23Lazy-loading&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=h%2FGUwYdqUFaP7y2R9r%2BD40xKGAQ3A7igBm0PWP9%2BlpM%3D&reserved=0 <https://apc01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fcran.r-project.org%2Fdoc%2Fmanuals%2FR-ints.html%23Lazy-loading&data=04%7C01%7Cmurray.efford%40otago.ac.nz%7C0215a2eac18a47b8f63108d940bcd5d9%7C0225efc578fe4928b1579ef24809e9ba%7C1%7C0%7C637612003078348021%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=h%2FGUwYdqUFaP7y2R9r%2BD40xKGAQ3A7igBm0PWP9%2BlpM%3D&reserved=0> I know nothing about it so I will not comment further. 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