Hi all, I am trying to submit our package scDiffCom ( https://github.com/CyrilLagger/scDiffCom) to CRAN. However, it does not pass the windows automatic checks for some unclear reason to me. Any help would be really appreciated!
Basically, the output from R-CMD-check is fine locally and for the github actions I specified, but not for the automatic windows tests. Please see below: ------------ 1) no ERRORs, no WARNINGs, no NOTEs when running devtools:check() locally (windows 10, R 4.1.0) 2) no ERRORs, no WARNINGs, no NOTEs when running github-actions <https://github.com/CyrilLagger/scDiffCom/blob/master/.github/workflows/check-standard.yaml> for windows-latest (release), macOS-latest (release), ubuntu-20.04 (release), ubuntu-20.04 (devel) 3) 1 ERROR when running devtools:check_win_devel: *Running the tests in 'tests/testthat.R' failed.* However, testthat.Rout.fail is not informative to me, it only contains: > library(testthat) > library(scDiffCom) > > test_check("scDiffCom") Loading required package: SeuratObject 4) 2 ERRORs when running devtools:check_win_release. As follows: ** running tests for arch 'i386' ... [5s] ERROR Running 'spelling.R' [0s] Running 'testthat.R' [4s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(scDiffCom) > > test_check("scDiffCom") Loading required package: SeuratObject == Failed tests ================================================================ -- Error (test-everything.R:171:1): (code run outside of `test_that()`) -------- Error: error in load action .__A__.1 for package RcppAnnoy: loadModule(module = "AnnoyAngular", what = TRUE, env = ns, loadNow = TRUE): Unable to load module "AnnoyAngular": bad binding access Backtrace: x 1. +-base::lapply(...) test-everything.R:171:0 2. | \-scDiffCom:::FUN(X[[i]], ...) 3. | \-scDiffCom:::extract_analysis_inputs(...) test-everything.R:174:4 4. | \-scDiffCom:::extract_seurat_inputs(...) 5. \-base::loadNamespace(x) 6. +-base::namespaceImportFrom(...) 7. | \-base::asNamespace(ns) 8. \-base::loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 9. \-methods::cacheMetaData(ns, TRUE, ns) 10. \-methods:::.doLoadActions(where, attach) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 6 ] Error: Test failures Execution halted ** running tests for arch 'x64' ... [5s] ERROR Running 'spelling.R' [0s] Running 'testthat.R' [5s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(scDiffCom) > > test_check("scDiffCom") Loading required package: SeuratObject ----------- Since I have no error locally on my machine, I don't know what I could change for the automatic tests to work. Also, I don't understand why the github-action for windows-latest (release) works but not devtools:check_win_release(). By the way, I installed R devel on my machine in addition to R 4.1.0, but it turns out I cannot test our package installation because it has Bioconductor dependencies and "Bioconductor does not yet build and check packages for R version 4.2" as reported here <https://github.com/r-hub/rhub/issues/471>. The exact same error actually also occurs when I run devtools:check_rhub(). It does not seem to be related to the failure of testthat I reported above, but I thought it might be useful to mention it. Thanks in advance for any help/suggestions! Cyril [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
