Hi Gabor, My full output is below:
* Error: object 'col_ed' is not exported by 'namespace:cli' Execution halted ERROR: lazy loading failed for package 'packagename' ----------------------------------- ERROR: package installation failedError: 'col_ed' is not an exported object from 'namespace:cli'Execution haltedExited with status 1.* Unfortunately, I can't share a full reproducible example since this package is also included in a manuscript for publication. I don't export any objects named 'col_ed' so I am quite perplexed by this error message. I'd appreciate any advice! Danielle On Thu, Apr 29, 2021 at 11:42 AM Gábor Csárdi <csardi.ga...@gmail.com> wrote: > If you could share a reproducible example with us, and/or you could > show the full output, then we could probably help you better. > > Gabor > > On Thu, Apr 29, 2021 at 6:29 PM Danielle Maeser <maese...@umn.edu> wrote: > > > > Hi Duncan, > > > > I really appreciate your response. Unfortunately, I am still receiving > the > > error below. > > > > If anyone has ideas, I'd appreciate it! > > > > This is the only online forum I can find that discusses the error, but I > > have not found it helpful: https://github.com/r-lib/cli/issues/94 > > > > > > > > > > * ERROR: package installation failedError: 'col_ed' is not an exported > > object from 'namespace:cli'Execution halted* > > > > On Wed, Apr 28, 2021 at 7:32 PM Duncan Murdoch <murdoch.dun...@gmail.com > > > > wrote: > > > > > On 28/04/2021 4:41 p.m., Danielle Maeser wrote: > > > > Hi Duncan, > > > > > > > > Thank you for your feedback! > > > > > > > > Unfortunately, when I made the changes recommended I have a new > error: > > > > > > > > *trying to use CRAN without setting a mirror > > > > > > That would be a result of your code. Do you call install.packages() in > > > one of your functions? Normally you shouldn't do that. > > > > > > > * > > > > > > > > And: > > > > *Error: 'col_ed' is not an exported object from 'namespace:cli'* > > > > > > Similarly, something in your code or NAMESPACE file. Do you refer to > > > cli::col_ed, or try to import col_ed from cli? > > > > > > > * > > > > * > > > > My description file includes: > > > > *VignetteBuilder: knitr > > > > Depends: R (>= 4.0), knitr > > > > License: GPL-2 > > > > Encoding: UTF-8 > > > > Roxygen: list(rmarkdown = TRUE) > > > > RoxygenNote: 7.1.1 > > > > LazyData: true > > > > > > Do you really have a data subdir in your package? You shouldn't have > the > > > LazyData line without one. > > > > > > > Suggests: knitr, rmarkdown* > > > > > > You shouldn't list knitr in both Depends and Suggests. > > > > > > Duncan Murdoch > > > > > > > * > > > > * > > > > And my vignette includes: > > > > *title: "title" > > > > author: "name" > > > > output: rmarkdown::html_vignette > > > > vignette: > > > > > %\VignetteIndexEntry{title} > > > > %\VignetteEngine{knitr::rmarkdown} > > > > %\VignetteEncoding{UTF-8}* > > > > * > > > > * > > > > I'd appreciate any advice! > > > > > > > > Danielle > > > > > > > > On Wed, Apr 28, 2021 at 2:27 PM Duncan Murdoch < > murdoch.dun...@gmail.com > > > > <mailto:murdoch.dun...@gmail.com>> wrote: > > > > > > > > On 28/04/2021 2:44 p.m., Danielle Maeser wrote: > > > > > Hello, > > > > > > > > > > I am doing a R CMD check on an R package I have developed. > > > > However, I keep > > > > > receiving the warning below: > > > > > > > > > > *Files in the 'vignettes' directory but no files in > 'inst/doc':* > > > > > > > > > > And > > > > > > > > > > *Files named as vignettes but with no recognized vignette > engine:* > > > > > > > > > > I am pretty sure I have the correct YAML header for my > vignettes, > > > > and also > > > > > inst/docs is an older convention for vignettes that's no > longer > > > > > recommended. > > > > > > > > > > Do you have an idea of what's going wrong? I have attached my > > > > YAML header > > > > > below as reference. > > > > > > > > You may be missing the line > > > > > > > > VignetteBuilder: knitr > > > > > > > > in your DESCRIPTION file. Without that, R won't know how to > > > interpret > > > > your vignette. > > > > > > > > It's also a little unusual to use > > > > > > > > %\VignetteEngine{knitr::markdown} > > > > > > > > nowadays; the more common engine is knitr::rmarkdown (but I > believe > > > > both > > > > are still supported). If you make this change you should also > have > > > > > > > > rmarkdown::html_vignette > > > > > > > > as the output format. > > > > > > > > Finally, since a recent update of knitr, you need to make sure > that > > > > package holding the output format (i.e. markdown currently, > > > > rmarkdown if > > > > you make the change above) is declared as a Suggested package in > your > > > > DESCRIPTION file. > > > > > > > > Duncan Murdoch > > > > > > > > > > > > > > Sincerely, > > > > > Danielle > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > *title: "title of this vignette"author: "name"output: > > > > > markdown::html_vignettevignette: > > %\VignetteIndexEntry{vignette > > > > title} > > > > > %\VignetteEngine{knitr::markdown} %\VignetteEncoding{UTF-8}* > > > > > > > > > > > > > > > > > > > > > -- > > > > Ph.D. Student > > > > Bioinformatics and Computational Biology > > > > University of Minnesota > > > > > > > > > > > > > > -- > > Ph.D. Student > > Bioinformatics and Computational Biology > > University of Minnesota > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-package-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > -- Ph.D. Student Bioinformatics and Computational Biology University of Minnesota [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
