Not that it solves your problem per se, but here's what I think CRAN only has rtracklayer 1.48.0 installed on WIndows, i.e. why you get error "namespace 'rtracklayer' 1.48.0 is being loaded, but >= 1.51.5 is required.":
* The current Bioconductor "release" is version 3.12 * As you say, Bioconductor 3.12 provides rtracklayer 1.50.0 (https://www.bioconductor.org/packages/3.12/bioc/html/rtracklayer.html) * However, if you look at that page, for Windows it only provides rtracklayer 1.49.5 (this is because rtracklayer never successfully checked on Bioconductor 3.12) * Since the minor version component of rtracklayer 1.49.5 is _odd_, it means it's from a Bioconductor 'devel' branch, i.e. when Bioconductor 3.12 was in devel. * Thus, the most recent Bioconductor "release" where rtracklayer was successfully distributed on Windows is Bioconductor 3.11. * Bioconductor 3.11 provides rtracklayer 1.48.0 (https://www.bioconductor.org/packages/3.11/bioc/html/rtracklayer.html) Clear as mud? I suspect you're using Suggest: rtracklayer (https://github.com/timoast/signac/blob/develop/DESCRIPTION) in your new version. If so, that's good. I also don't think you're doing anything wrong here. Instead, I think it's one of your other Bioconductor dependencies under 'Imports:', or possibly under 'Suggests:', that depend on 'rtracklayer'. The fact that error says "namespace 'rtracklayer' 1.48.0 is being loaded, but >= 1.51.5 is required.", means that one of those Bioconductor dependencies, or their dependencies, has an explicit 'rtracklayer (>= 1.51.5)' under either Depends: or Imports:. My recommendation is that you start identifying that Bioconductor package, and in what way your 'Signac' depends on that package. That will help you decide on what to do next. /Henrik PS. This can happen because Bioconductor allows a package to propagate to a new "release" branch even if it fails on one of the operating systems. On Fri, Apr 16, 2021 at 1:59 PM Tim Stuart <tstu...@nygenome.org> wrote: > > Hi all, > > I am trying to submit an update to my package > (https://cran.r-project.org/package=Signac) to CRAN, but it is > currently failing to install on the Windows server. I see the > following installation error: "namespace 'rtracklayer' 1.48.0 is being > loaded, but >= 1.51.5 is required." > > The current release version for rtracklayer is 1.50.0 > (https://www.bioconductor.org/packages/release/bioc/html/rtracklayer.html). > My package does not set a version requirement for rtracklayer, so this > installation error must be caused by having a pre-release version of > one of my bioconductor dependencies installed on the windows server. > > Does anyone know how I might be able to solve this issue? I have tried > contacting the CRAN team a few times by reply-all to the CRAN emails, > but have not had any response from them. This seems like an issue that > could only be solved by fixing the installation of packages on the > CRAN Windows server. > > Incoming test results: > https://win-builder.r-project.org/incoming_pretest/Signac_1.1.2_20210415_225235/ > > Thanks, > Tim > > -- > > This message is for the recipient’s use only, and may contain > confidential, privileged or protected information. Any unauthorized use or > dissemination of this communication is prohibited. If you received this > message in error, please immediately notify the sender and destroy all > copies of this message. The recipient should check this email and any > attachments for the presence of viruses, as we accept no liability for any > damage caused by any virus transmitted by this email. > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
