Adding the following to .travis.yml: before_install: - if [ "$TRAVIS_OS_NAME" = "linux" ]; then sudo apt-get -y install libfftw3-dev ; fi
did the trick! Thank you both for your attention to this issue! Bests, Marta Karas On Thu, Sep 10, 2020 at 8:35 AM Karim Rahim <karim.ra...@gmail.com> wrote: > Thanks, > > That may be it. It is a missing dependency. > > It's been a while and I'm not sure which package exposes fftw3.h ... > > Karim > > On Thu, Sep 10, 2020 at 8:16 AM Dirk Eddelbuettel <e...@debian.org> wrote: > >> >> On 9 September 2020 at 23:45, Karim Rahim wrote: >> | sudo apt-get install -y fftw3 >> >> Or maybe rather >> >> sudo apt-get install libfftw3-dev >> >> to get the development headers? >> >> Dirk >> >> | Then try again. >> | >> | Let me know if it doesn't work. >> | >> | Cheers! >> | Karim >> | >> | On Wed, Sep 9, 2020 at 10:27 PM Max Turgeon <max.turg...@umanitoba.ca> >> wrote: >> | > >> | > Hi Marta, >> | > >> | > One change I can see from your Git history that seems to match the >> first failed build on Travis is when you added "Imports: fftwtools" to your >> DESCRIPTION file. And it makes sense, because if we look at its DESCRIPTION >> file, we can see that it has fftw3 as a SystemRequirements. In other words, >> it needs to be installed on Travis before you can run the checks on your >> package. >> | > >> | > As for solutions, I can see that Karim wrote a short description of >> how to install the library on Linux, and there's a link for Mac; all this >> is on the Github repo: https://github.com/krahim/fftwtools >> | > >> | > I also noticed that there is an R package wrapping fftw on CRAN ( >> https://cran.r-project.org/package=fftw) and I can see that it's a >> Suggested package for fftwtools. I haven't tried it, but presumably you >> could install the fftw R package, instead of the fftw3 library. >> | > >> | > HTH, >> | > >> | > Max Turgeon >> | > Assistant Professor >> | > Department of Statistics >> | > Department of Computer Science >> | > University of Manitoba >> | > maxturgeon.ca >> | > >> | > >> | > >> | > ________________________________ >> | > From: R-package-devel <r-package-devel-boun...@r-project.org> on >> behalf of Marta Karaś <marta.kar...@gmail.com> >> | > Sent: Wednesday, September 9, 2020 9:09 PM >> | > To: package-develop <r-package-devel@r-project.org> >> | > Cc: karim.ra...@queensu.ca <karim.ra...@queensu.ca> >> | > Subject: [R-pkg-devel] Fixing travis build fail due to fftwtools >> fatal error (fftw3.h: No such file or directory) >> | > >> | > ******************************************************** >> | > Caution: This message was sent from outside the University of >> Manitoba. >> | > ******************************************************** >> | > >> | > Dear all, >> | > >> | > I have been facing travis build fail on linux xenial due to *fftwtools >> | > fatal error* (fftw3.h: No such file or directory) with my R package. >> The >> | > error appeared at a random time a few months ago (at a random time := >> I do >> | > not link it with any fftwtools-function related change commit I did) >> and >> | > persists. >> | > >> | > There is not much I achieved in googling and trying to decipher it, >> sadly; >> | > I am hoping maybe some Community members saw a similar error with >> their dev >> | > work and can suggest a hint/solution? >> | > >> | > Package GitHub: https://github.com/martakarass/runstats >> | > Failed Travis job log: >> | > https://travis-ci.com/github/martakarass/runstats/jobs/383037333 >> | > >> | > Error excerpt: >> | > >> | > * installing *source* package ‘fftwtools’ ... >> | > ** package ‘fftwtools’ successfully unpacked and MD5 sums checked >> | > ** using staged installation >> | > ** libs >> | > gcc -I"/opt/R/4.0.2/lib/R/include" -DNDEBUG -I/usr/local/include >> -fpic >> | > -g -O2 -c fftwtools.c -o fftwtools.o >> | > fftwtools.c:28:18: fatal error: fftw3.h: No such file or directory >> | > compilation terminated. >> | > /opt/R/4.0.2/lib/R/etc/Makeconf:167: recipe for target 'fftwtools.o' >> failed >> | > make: *** [fftwtools.o] Error 1 >> | > ERROR: compilation failed for package ‘fftwtools’ >> | > * removing ‘/home/travis/R/Library/fftwtools’ >> | > Error in i.p(...) : >> | > (converted from warning) installation of package ‘fftwtools’ had >> non-zero >> | > exit status >> | > Calls: <Anonymous> ... with_rprofile_user -> with_envvar -> force -> >> force >> | > -> i.p >> | > Execution halted >> | > The command "Rscript -e 'deps <- >> remotes::dev_package_deps(dependencies = >> | > NA);remotes::install_deps(dependencies = TRUE);if (!all(deps$package >> %in% >> | > installed.packages())) { message("missing: ", >> paste(setdiff(deps$package, >> | > installed.packages()), collapse=", ")); q(status = 1, save = "no")}'" >> | > failed and exited with 1 during . >> | > Your build has been stopped. >> | > >> | > >> | > Thank you, >> | > >> | > Marta >> | > >> | > [[alternative HTML version deleted]] >> | > >> | > ______________________________________________ >> | > R-package-devel@r-project.org mailing list >> | > https://stat.ethz.ch/mailman/listinfo/r-package-devel >> | >> | ______________________________________________ >> | R-package-devel@r-project.org mailing list >> | https://stat.ethz.ch/mailman/listinfo/r-package-devel >> >> -- >> https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org >> > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
