Dear Mac users,
Can someone of you identify the cause of the problem in
https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/ff-00check.html
I can't because I don't have access to a Mac.
It seems that gc() after rm(ffobject) does not remove the ff file in rows
(@test-zero_lengths.R#34)
(@test-zero_lengths.R#35)
(@test-zero_lengths.R#63)
(@test-zero_lengths.R#64)
so maybe the finalizer is not triggered? Does delete(ffobject) work?
Kind regards
Jens
-------- Forwarded Message --------
Subject: Re: CRAN package ff
Date: Mon, 24 Aug 2020 08:23:24 +0100
From: Prof Brian Ripley <rip...@stats.ox.ac.uk>
Reply-To: c...@r-project.org
To: jens.oehlschlae...@truecluster.com
CC: c...@r-project.org
On 24/08/2020 08:19, Prof Brian Ripley wrote:
> Dear maintainer,
>
> Please see the problems shown on
> <https://cran.r-project.org/web/checks/check_results_ff.html>.
>
> Please correct before 2020-09-07 to safely retain your package on CRAN.
>
> The CRAN Team
>
I am seeing the macOS errors on all flavours: a more complete log is
installed.
--
Brian D. Ripley, rip...@stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford
* using log directory â/Users/ripley/R/packages/tests-devel/ff.Rcheckâ
* using R Under development (unstable) (2020-08-10 r79000)
* using platform: x86_64-apple-darwin17.7.0 (64-bit)
* using session charset: UTF-8
* using option â--no-stop-on-test-errorâ
* checking for file âff/DESCRIPTIONâ ... OK
* this is package âffâ version â4.0.2â
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package âffâ can be installed ... [42s/55s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [33s/44s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from âinst/docâ ... OK
* checking examples ... [13s/18s] OK
* checking for unstated dependencies in âtestsâ ... OK
* checking tests ...
Running âtestthat.Râ
ERROR
Running the tests in âtests/testthat.Râ failed.
Complete output:
> library(testthat)
> test_check("ff")
Loading required package: ff
Loading required package: bit
Attaching package: 'bit'
The following object is masked from 'package:base':
xor
Attaching package ff
-
getOption("fftempdir")=="/var/folders/gv/f60jb6tn7fxb9sz1yfr7d_vm0000gp/T//Rtmp8HK6B8/working_dir/Rtmp4HJlIg/ff"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush" -- consider "ffeachflush" if your
system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for
tuning your system
- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning
your system
Attaching package: 'ff'
The following objects are masked from 'package:utils':
write.csv, write.csv2
The following objects are masked from 'package:base':
is.factor, is.ordered
ââ 1. Failure: file size is correct when creating ff integer from
scratch (@tes
file.exists(f0) isn't false.
ââ 2. Failure: file size is correct when creating ff integer from
scratch (@tes
file.exists(f1) isn't false.
ââ 3. Failure: file size is correct when creating ff quad from scratch
(@test-z
file.exists(f0) isn't false.
ââ 4. Failure: file size is correct when creating ff quad from scratch
(@test-z
file.exists(f1) isn't false.
Error in dim(rtmp) <- dtmp :
dims [product 1] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 81] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 1] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 81] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 1] do not match the length of object [0]
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 81] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [1]
Error in `dim<-.ff`(`*tmp*`, value = c(0L, 0L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [1]
Error in `dim<-.ff`(`*tmp*`, value = 0:1) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [1]
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [1]
Error in `dim<-.ff`(`*tmp*`, value = c(0L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [1]
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [1]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 0L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [1]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 81] do not match the length of object [1]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 1] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 81] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = c(0L, 0L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = 0:1) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in dim(rtmp) <- dtmp :
dims [product 1] do not match the length of object [9]
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = c(0L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 0L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 81] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = c(9L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 1] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [0]
Error in dim(rtmp) <- dtmp :
dims [product 81] do not match the length of object [0]
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = c(0L, 0L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = 0:1) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = 1:0) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 1] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in `dim<-.ff`(`*tmp*`, value = c(0L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [9]
Error in dim(rtmp) <- dtmp :
dims [product 81] do not match the length of object [9]
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [81]
Error in `dim<-.ff`(`*tmp*`, value = c(0L, 0L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [81]
Error in `dim<-.ff`(`*tmp*`, value = 0:1) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [81]
Error in `dim<-.ff`(`*tmp*`, value = 1:0) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 1] do not match the length of object [81]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 1L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [81]
Error in `dim<-.ff`(`*tmp*`, value = c(0L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [81]
Error in `dim<-.ff`(`*tmp*`, value = c(1L, 9L)) :
you can only grow or shrink the slowest rotating dim
Error in dim(rtmp) <- dtmp :
dims [product 0] do not match the length of object [81]
Error in dim(rtmp) <- dtmp :
dims [product 9] do not match the length of object [81]
ââ testthat results
âââââââââââââââââââââââââââââââââââââââââââââââââââââââââââ
[ OK: 965 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 4 ]
1. Failure: file size is correct when creating ff integer from scratch
(@test-zero_lengths.R#34)
2. Failure: file size is correct when creating ff integer from scratch
(@test-zero_lengths.R#35)
3. Failure: file size is correct when creating ff quad from scratch
(@test-zero_lengths.R#63)
4. Failure: file size is correct when creating ff quad from scratch
(@test-zero_lengths.R#64)
Error: testthat unit tests failed
Execution halted
* checking PDF version of manual ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR
See
â/Users/ripley/R/packages/tests-devel/ff.Rcheck/00check.logâ
for details.
187.89 real 131.82 user 12.43 sys
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