I think this means that the ucminf package was not installed properly. There is probably something about it in the log....
G. On Thu, Feb 7, 2019 at 5:15 PM Goldfeld, Keith <keith.goldf...@nyulangone.org> wrote: > > I did just take a look at the log, which may provide some insight, though not > to me. > > This is the key part of the message where things go awry: > > #> Error in dyn.load(file, DLLpath = DLLpath, ...) : > #> unable to load shared object '/home/docker/R/ucminf/libs/ucminf.so': > #> : cannot open shared object file: No such file or directory > #> ERROR: lazy loading failed for package ‘ordinal’ > > Does this pinpoint the problem? If so, what can I do about it? > > > > And here is the full log from the attempt to install ordinal. > > #> * installing *source* package ‘ordinal’ ... > #> ** package ‘ordinal’ successfully unpacked and MD5 sums checked > #> ** libs > #> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c get_fitted.c -o get_fitted.o > #> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o > #> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c links.c -o links.o > #> gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -c utilityFuns.c -o utilityFuns.o > #> g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o > ordinal.so get_fitted.o init.o links.o utilityFuns.o -L/usr/lib/R/lib -lR > #> installing to /home/docker/R/ordinal/libs > #> ** R > #> ** data > #> *** moving datasets to lazyload DB > #> ** inst > #> ** byte-compile and prepare package for lazy loading > #> Error in dyn.load(file, DLLpath = DLLpath, ...) : > #> unable to load shared object '/home/docker/R/ucminf/libs/ucminf.so': > #> libRblas.so: cannot open shared object file: No such file or directory > #> ERROR: lazy loading failed for package ‘ordinal’ > #> * removing ‘/home/docker/R/ordinal’ > > On 2/7/19, 11:56 AM, "Gábor Csárdi" <csardi.ga...@gmail.com> wrote: > > You probably have an error earlier in the R-hub build log that > explains why ordinal failed to install. > > Gabor > > On Thu, Feb 7, 2019 at 4:44 PM Goldfeld, Keith > <keith.goldf...@nyulangone.org> wrote: > > > > I am using devtools::check_rhub() before submitting a new version of my > package simstudy to CRAN. I am getting an error message about a package I use > in the vignette from the Ubuntu Linux platform: > > > > * checking package dependencies ... ERROR > > Package suggested but not available: ‘ordinal’ > > > > The suggested packages are required for a complete check. > > Checking can be attempted without them by setting the environment > > variable _R_CHECK_FORCE_SUGGESTS_ to a false value. > > > > > > This is not an issue for any of the other platforms. Any thoughts about > how I can address this? > > > > Thanks - Keith > > > > > > > > ------------------------------------------------------------ > > This email message, including any attachments, is for the sole use of > the intended recipient(s) and may contain information that is proprietary, > confidential, and exempt from disclosure under applicable law. Any > unauthorized review, use, disclosure, or distribution is prohibited. If you > have received this email in error please notify the sender by return email > and delete the original message. Please note, the recipient should check this > email and any attachments for the presence of viruses. The organization > accepts no liability for any damage caused by any virus transmitted by this > email. > > ================================= > > ______________________________________________ > > R-package-devel@r-project.org mailing list > > > https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Dpackage-2Ddevel&d=DwIFaQ&c=j5oPpO0eBH1iio48DtsedeElZfc04rx3ExJHeIIZuCs&r=fPRk5fx5iys38LPukC4wc6PALfhKJF_KlHbdD5hrfGc&m=TJIRieFLuZSc6FIxS6zn8biWM-gmvy8nObawIGeNrFE&s=E-Gpu00AFdmfrbGcWmaBghYZS6WKwAyuCLksWq4xRDI&e= > > > > ------------------------------------------------------------ > This email message, including any attachments, is for ...{{dropped:11}} ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
