Without code we are guessing. A bug is possible but I will make another guess suggestion.
Delete all binary files created by devtools during compilation in your package directory. devtools::load_all() is so fast partly because it recompiles the C/Fortran files only when necessary but sometimes compilation may be needed even if devtools thinks otherwise. Georgi Boshnakov -----Original Message----- From: Duncan Murdoch [mailto:murdoch.dun...@gmail.com] Sent: 07 November 2018 00:26 To: Rampal Etienne; Georgi Boshnakov; r-package-devel@r-project.org Subject: Re: [R-pkg-devel] nativeRoutines error when using roxygen2 in RStudio On 06/11/2018 5:17 PM, Rampal Etienne wrote: > Dear Duncan, > > I don't get it when using R CMD check. > > I only get it when building/loading using roxygen2 or when I call > load_all (which roxygen2 does too, I think). load_all calls load_dll > which then throws this error. I have registered my routines in > R_init_secsse.c: > > void R_init_secsse(DllInfo *dll) > { > R_registerRoutines(dll, NULL, NULL, FortranEntries, NULL); > R_useDynamicSymbols(dll, FALSE); > } > > Any suggestions? Nope! Sounds like a bug in devtools/roxygen2, but I don't know either of those packages well. Duncan Murdoch > > Cheers, Rampal > > > On 06-Nov-18 22:50, Duncan Murdoch wrote: >> On 06/11/2018 3:27 PM, Rampal Etienne wrote: >>> Dear Georgi, >>> >>> Thanks for your suggestions. I have tried to install the development >>> version of roxygen2, but to no avail. >>> >>> I don't have a Collate field in DESCRIPTION. >>> >>> devtools::check() gives me: >>> >>> Updating secsse documentation Loading secsse Registered S3 method >>> overwritten by 'dplyr': method from as.data.frame.tbl_df tibble >>> Registered S3 method overwritten by 'geiger': method from >>> unique.multiPhylo ape Error in nativeRoutines[[lib]] <- routines : >>> object 'nativeRoutines' not found >> >> Do you get that error if you run "R CMD check" on the tarball of your >> package? >> >> If so, how comfortable are you with debugging R code? I can tell you >> how to debug the check process, but it's a little tricky. >> >> Duncan Murdoch >> >>> >>> >>> Any other suggestions? >>> >>> Cheers, Rampal >>> >>> On 02-Nov-18 08:33, Georgi Boshnakov wrote: >>>> Try installing the latest development version of roxygen2, if you >>>> are not using it already. >>>> There was a bug in the released version preventing installation in >>>> some cases. >>>> If you don't want to use development version of roxygen2, >>>> try putting all filenames in the Collate field in DESCRIPTION on one >>>> line and make sure that there is a single space >>>> between them. This should work if your problem is what I think. >>>> >>>> By the way, in such cases you will get more informative messages if >>>> you run devtools::check(). >>>> >>>> -- >>>> Georgi Boshnakov >>>> >>>> >>>> ________________________________________ >>>> From: R-package-devel [r-package-devel-boun...@r-project.org] on >>>> behalf of Rampal Etienne [rampaletie...@gmail.com] >>>> Sent: 01 November 2018 22:40 >>>> To: r-package-devel@r-project.org >>>> Subject: [R-pkg-devel] nativeRoutines error when using roxygen2 in >>>> RStudio >>>> >>>> Since a few weeks (after updating R-devel and Rtools) I get the >>>> following error when trying to build a package or document it, when >>>> using roxygen2 in RStudio: >>>> >>>> In R CMD INSTALL Error in nativeRoutines[[lib]] <- routines : object >>>> 'nativeRoutines' not found Calls: suppressPackageStartupMessages ... >>>> withCallingHandlers -> <Anonymous> -> load_all -> load_dll Execution >>>> halted >>>> >>>> When I disable roxygen2, I do not get this error, but of course the >>>> documentation is not created. >>>> >>>> I have installed the latest versions of RStudio, Rtools, R-devel, >>>> roxygen2, pkgload, but the problem persists. >>>> >>>> Does anybody have a clue what is causing this? I am using Windows 10, >>>> and the package contains Fortran code. >>>> >>>> Kind regards, >>>> Rampal Etienne >>>> >>>> [[alternative HTML version deleted]] >>>> >>>> ______________________________________________ >>>> R-package-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel >>> >>> >>> [[alternative HTML version deleted]] >>> >>> ______________________________________________ >>> R-package-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/r-package-devel >>> >> > ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
