Fantastic! Avi
On Sat, Sep 15, 2018 at 7:26 PM Erin Hodgess <erinm.hodg...@gmail.com> wrote: > Finally got Openblas installed! The speed up is amazing! Thanks for your > help and patience. > > Sincerely, > Erin > > Erin Hodgess, PhD > mailto: erinm.hodg...@gmail.com > > > On Fri, Sep 14, 2018 at 2:46 PM Avraham Adler <avraham.ad...@gmail.com> > wrote: > >> No, I’m sorry, I haven’t seen that and I built R 3.5.1 with OpenBLAS >> recently. Does it work if you use the vanilla BLAS? >> >> Avi >> >> On Fri, Sep 14, 2018 at 4:14 PM Erin Hodgess <erinm.hodg...@gmail.com> >> wrote: >> >>> Hi again! >>> >>> I checked everything, did "make distribution" and the same thing >>> occurred. >>> >>> >>> d:/Rtools/mingw_64/bin/ar -rucs ../SuiteSparse_config.a >>> SuiteSparse_config.o >>> D:\Rtools\mingw_64\bin\nm.exe: 'sublibs': No such file >>> d:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o Matrix.dll >>> tmp.def CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o >>> chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o >>> dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o >>> dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o >>> sparseQR.o abIndex.o -LD:/erinm/R-3.5.1/bin/x64 -lRlapack >>> -LD:/erinm/R-3.5.1/bin/x64 -lRblas -LD:/erinm/R-3.5.1/extsoft/lib/x64 >>> -LD:/erinm/R-3.5.1/extsoft/lib -LD:/erinm/R-3.5.1/bin/x64 -lR >>> CHMfactor.o:CHMfactor.c:(.text+0x3b): undefined reference to >>> `cholmod_copy_factor' >>> CHMfactor.o:CHMfactor.c:(.text+0x7b): undefined reference to >>> `cholmod_change_factor' >>> CHMfactor.o:CHMfactor.c:(.text+0x92): undefined reference to >>> `cholmod_factor_to_sparse' >>> CHMfactor.o:CHMfactor.c:(.text+0xa5): undefined reference to >>> `cholmod_free_factor' >>> CHMfactor.o:CHMfactor.c:(.text+0x18e): undefined reference to >>> `cholmod_solve' >>> CHMfactor.o:CHMfactor.c:(.text+0x267): undefined reference to >>> `cholmod_copy_factor' >>> CHMfactor.o:CHMfactor.c:(.text+0x27e): undefined reference to >>> `cholmod_updown' >>> CHMfactor.o:CHMfactor.c:(.text+0x396): undefined reference to >>> `cholmod_spsolve' >>> CHMfactor.o:CHMfactor.c:(.text+0x620): undefined reference to >>> `cholmod_factorize_p' >>> CHMfactor.o:CHMfactor.c:(.text+0x658): undefined reference to >>> `cholmod_change_factor' >>> CHMfactor.o:CHMfactor.c:(.text+0x720): undefined reference to >>> `cholmod_copy_factor' >>> CHMfactor.o:CHMfactor.c:(.text+0x87b): undefined reference to >>> `cholmod_copy_factor' >>> CHMfactor.o:CHMfactor.c:(.text+0x8c3): undefined reference to >>> `cholmod_free_factor' >>> Csparse.o:Csparse.c:(.text+0x9f1): undefined reference to >>> `cholmod_sparse_to_dense' >>> Csparse.o:Csparse.c:(.text+0xcd6): undefined reference to `cholmod_speye' >>> Csparse.o:Csparse.c:(.text+0xd21): undefined reference to `cholmod_add' >>> Csparse.o:Csparse.c:(.text+0xd31): undefined reference to >>> `cholmod_free_sparse' >>> Csparse.o:Csparse.c:(.text+0xd3d): undefined reference to >>> `cholmod_copy_sparse' >>> Csparse.o:Csparse.c:(.text+0xd4c): undefined reference to >>> `cholmod_free_sparse' >>> Csparse.o:Csparse.c:(.text+0xdf9): undefined reference to `cholmod_copy' >>> >>> Does this look familiar, please? >>> >>> Thanks, >>> Erin >>> >>> Erin Hodgess, PhD >>> mailto: erinm.hodg...@gmail.com >>> >>> >>> On Fri, Sep 14, 2018 at 1:13 PM Avraham Adler <avraham.ad...@gmail.com> >>> wrote: >>> >>>> Try following the directions here. They have worked for me for years. >>>> Please see the comments too. >>>> >>>> https://www.avrahamadler.com/r-tips/build-openblas-for-windows-r64/ >>>> >>>> Hope that helps, >>>> >>>> Avi >>>> >>>> On Fri, Sep 14, 2018 at 2:34 PM Erin Hodgess <erinm.hodg...@gmail.com> >>>> wrote: >>>> >>>>> Hello! >>>>> >>>>> I'm building a package that needs Openblas for matrix manipulation >>>>> speed up. >>>>> >>>>> I built Openblas on Windows 10. I updated the MkRules.local, >>>>> src/extra/blas/Makefile.win, etc. Things are working with "make all". >>>>> >>>>> However, when I run "make recommended", I have trouble with the Matrix >>>>> package build. The components of the Cholesky all appear as >>>>> unreferenced. >>>>> >>>>> Has anyone else run into this, please? I'm working with R-3.5.1 >>>>> source. >>>>> >>>>> Thanks, >>>>> Erin >>>>> >>>>> Erin Hodgess, PhD >>>>> mailto: erinm.hodg...@gmail.com >>>>> >>>>> [[alternative HTML version deleted]] >>>>> >>>>> ______________________________________________ >>>>> R-package-devel@r-project.org mailing list >>>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel >>>>> >>>> -- >>>> Sent from Gmail Mobile >>>> >>> -- >> Sent from Gmail Mobile >> > -- Sent from Gmail Mobile [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
