On 20/04/2018 3:53 PM, David Hervás via R-package-devel wrote:
Hi,
I have sent my package "clickR" to CRAN and was asked to fix the following NOTE:
* checking dependencies in R code ... NOTE
Missing or unexported object: 'lmerTest::summary'
I'm not sure what's going on, here is the Imports section of my DESCRIPTION
file:
Imports: beeswarm, boot, lme4, lmerTest, methods, ReporteRs, xtable
Here are the first lines of the function causing this NOTE:
report.merModLmerTest<-function(x, file=NULL, type="word", digits=3, digitspvals=3,
font=ifelse(Sys.info()["sysname"] == "Windows", "Arial",
"Helvetica")[[1]], pointsize=11, info=TRUE, ...){ sx <- lmerTest::summary(x) cor <- as.data.frame(lme4::VarCorr(x)) ...
And here is the output from getNamespaceExports("lmerTest") where "summary" is
listed at position [23]
[1] "lmer" "lsmeansLT" ".__T__is.infinite:base" [4] ".__T__as.integer:base" ".__T__as.numeric:base" ".__T__%*%:base" [7] ".__T__dim:base" ".__T__summary:base" ".__T__$<-:base" [10] ".__T__^:base" ".__T__sum:base" ".__T__rep:base" [13] ".__T__*:base" ".__T__[<-:base"
".__T__as.logical:base" [16] ".__T__dimnames:base" ".__T__%/%:base" ".__T__prod:base" [19] ".__T__[[<-:base" ".__T__/:base" "step" [22] "calcSatterth" "summary" ".__T__anova:stats" [25] ".__T__is.finite:base" ".__T__anyNA:base" ".__T__!:base" [28] ".__T__all:base" ".__T__+:base"
".__T__any:base" [31] ".__T__dim<-:base" ".__T__-:base" ".__T__[:base" [34] "anova" "difflsmeans" "lsmeans" [37] "rand" ".__C__merModLmerTest" ".__T__length:base" [40] ".__T__is.na:base" ".__T__dimnames<-:base" ".__T__&:base" [43] ".__T__%%:base"
".__T__$:base"
I have tried to reproduce this problem in my computer with different versions
of R (3.4.4, 3.5 RC and R-devel) and only get the NOTE when performing the
check with R-devel.
What should I do to fix this?
getNamespaceExports() is described on its help page as an internal
function, not intended for users. If you want to see the exports of a
package, look at its NAMESPACE file. For example,
file.show(system.file("NAMESPACE", package="lmerTest"))
which lists these lines as exports:
export(as_lmerModLmerTest)
export(calcSatterth)
export(contest)
export(contest1D)
export(contestMD)
export(difflsmeans)
export(get_model)
export(lmer)
export(ls_means)
export(lsmeansLT)
export(ranova)
export(show_tests)
export(step)
The summary() function isn't listed there, as Rune demonstrated.
Duncan Murdoch
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