Thierry,
Agreed. I just filed a bug report on the gitHub site.
Bill
> On Mar 21, 2018, at 3:21 PM, Thierry Onkelinx <thierry.onkel...@inbo.be>
> wrote:
>
> Dear Bill,
>
> The best way to fix your problem is IMHO to have it fixed in lme4. I've cc'ed
> Ben Bolker (lme4 maintainer) to inform him of this problem.
>
> Best regards,
>
>
> ir. Thierry Onkelinx
> Statisticus / Statistician
>
> Vlaamse Overheid / Government of Flanders
> INSTITUUT VOOR NATUUR- EN BOSONDERZOEK / RESEARCH INSTITUTE FOR NATURE AND
> FOREST
> Team Biometrie & Kwaliteitszorg / Team Biometrics & Quality Assurance
> thierry.onkel...@inbo.be
> Havenlaan 88 bus 73, 1000 Brussel
> www.inbo.be
>
> ///////////////////////////////////////////////////////////////////////////////////////////
> To call in the statistician after the experiment is done may be no more than
> asking him to perform a post-mortem examination: he may be able to say what
> the experiment died of. ~ Sir Ronald Aylmer Fisher
> The plural of anecdote is not data. ~ Roger Brinner
> The combination of some data and an aching desire for an answer does not
> ensure that a reasonable answer can be extracted from a given body of data. ~
> John Tukey
> ///////////////////////////////////////////////////////////////////////////////////////////
>
>
>
> 2018-03-21 21:12 GMT+01:00 William Revelle <li...@revelle.net>:
> Thanks. I had suspected another package, but couldn’t figure out how to show
> that.
>
> debug(Matrix::rBind) shows that the problem is in lme4
> #with
> debug(Matrix::rBind)
>
> x.df <- structure(list(values = c(9, 6, 8, 7, 10, 6, 2, 1, 4, 1, 5, 2,
> 5, 3, 6, 2, 6, 4, 8, 2, 8, 6, 9, 7), items = structure(c(1L,
> 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 3L, 3L, 3L, 3L, 3L,
> 3L, 4L, 4L, 4L, 4L, 4L, 4L), class = "factor", .Label = c("J1",
> "J2", "J3", "J4")), id = structure(c(1L, 2L, 3L, 4L, 5L, 6L,
> 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L, 5L, 6L, 1L, 2L, 3L, 4L,
> 5L, 6L), .Label = c("S1", "S2", "S3", "S4", "S5", "S6"), class = "factor")),
> row.names = c(NA,
> -24L), class = "data.frame")
>
> mod.lmer <- lme4::lmer(values ~ 1 + (1 | id) + +(1 | items),
> data = x.df, na.action = na.omit)
>
> #it calls rBind and then throws the warning which win.builder then calls and
> error.
>
> Now, I will work on how to get around this (not use lmer?) but at least now
> I know the problem.
>
> Bill
>
>
>
>
> > On Mar 21, 2018, at 2:04 PM, Joris Meys <jorism...@gmail.com> wrote:
> >
> > I suspect it is used in a function from another package then. The devtools
> > function run_examples() allows you to run the examples separately so you
> > can find the culprit easier. Function check_failures() extracts info from
> > the check logs. Could be helpful too.
> >
> > Cheers
> > Joris
> >
> > On Wed, 21 Mar 2018, 19:49 Alexandre Courtiol,
> > <alexandre.court...@gmail.com> wrote:
> > Hi William,
> > Perhaps you use rBind indirectly...
> > I don't know the best way to check that, but I would try to set a
> > debug(rBind) before running some of your code in an interactive session.
> > If any function uses rBind, you should notice as it will launch the
> > debugger.
> > Better ideas are welcome.
> > ++
> >
> > Alex
> >
> > On 21 March 2018 at 19:36, William Revelle <li...@revelle.net> wrote:
> >
> > > Dear friends,
> > >
> > > When testing my latest version of psych on win.builder, I keep getting the
> > > following Warning:
> > >
> > > * checking installed files from 'inst/doc' ... OK
> > > * checking files in 'vignettes' ... OK
> > > * checking examples ...
> > > ** running examples for arch 'i386' ... [32s] WARNING
> > > Found the following significant warnings:
> > >
> > > Warning: 'rBind' is deprecated.
> > > Deprecated functions may be defunct as soon as of the next release of
> > > R.
> > > See ?Deprecated.
> > > ** running examples for arch 'x64' ... [39s] WARNING
> > > Found the following significant warnings:
> > >
> > > Warning: 'rBind' is deprecated.
> > > Deprecated functions may be defunct as soon as of the next release of
> > > R.
> > > See ?Deprecated.
> > > * checking for unstated dependencies in vignettes ... OK
> > >
> > > I know that rBind is deprecated, but I don’t call it.
> > >
> > >
> > > I have searched my code and as far as I can tell, I do not use rBind (nor
> > > cBind). Nor do any of my examples.
> > >
> > > Any help would be appreciated.
> > >
> > > Thanks.
> > >
> > > Bill
> > >
> > >
> > > William Revelle personality-project.org/revelle.html
> > > Professor personality-project.org
> > > Department of Psychology www.wcas.northwestern.edu/psych/
> > > Northwestern University www.northwestern.edu/
> > > Use R for psychology personality-project.org/r
> > > It is 2 minutes to midnight www.thebulletin.org
> > >
> > > ______________________________________________
> > > R-package-devel@r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/r-package-devel
> > >
> >
> >
> >
> > --
> > Alexandre Courtiol
> >
> > http://sites.google.com/site/alexandrecourtiol/home
> >
> > *"Science is the belief in the ignorance of experts"*, R. Feynman
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-package-devel@r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
> William Revelle personality-project.org/revelle.html
> Professor personality-project.org
> Department of Psychology www.wcas.northwestern.edu/psych/
> Northwestern University www.northwestern.edu/
> Use R for psychology personality-project.org/r
> It is 2 1/2 minutes to midnight www.thebulletin.org
>
> ______________________________________________
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
>
William Revelle personality-project.org/revelle.html
Professor personality-project.org
Department of Psychology www.wcas.northwestern.edu/psych/
Northwestern University www.northwestern.edu/
Use R for psychology personality-project.org/r
It is 2 1/2 minutes to midnight www.thebulletin.org
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