Hello all, I submitted my package ( https://cran.r-project.org/web/packages/ewoc/index.html) to CRAN and it did not pass the automatic checks of win_builder. However, I did not have the same error or warning messages when I ran devtools::win_builder() and devtools::run_examples() before. I had the same notes, though.
See message from win_builder() CRAN: * using log directory 'd:/RCompile/CRANincoming/R-devel/ewoc.Rcheck' * using R Under development (unstable) (2018-01-19 r74138) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'ewoc/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ewoc' version '0.1.1' * checking CRAN incoming feasibility ... NOTE Maintainer: 'Marcio A. Diniz <marcio.di...@cshs.org>' Found the following (possibly) invalid URLs: URL: https://cran.rstudio.com/web/packages/ewoc/index.html From: README.md Status: 200 Message: OK CRAN URL not in canonical form Canonical CRAN.R-project.org URLs use https. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialized R objects in the sources ... OK * checking whether package 'ewoc' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... OK ** checking use of S3 registration ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK ** checking loading without being on the library search path ... WARNING Error: package or namespace load failed for 'ewoc' in namespaceExport(ns, exports): undefined exports: iter, nextElem, isplit, irnorm, irunif, irbinom, irnbinom, irpois, icount, idiv, ireadLines, iread.table, icountn, iapply In addition: Warning message: S3 methods 'iter.default', 'iter.iter', 'iter.matrix', 'iter.data.frame', 'iter.function', 'nextElem.containeriter', 'nextElem.matrixiter', 'nextElem.dataframeiter', 'nextElem.funiter', 'nextElem.abstractiter', 'as.list.iter', 'isplit.default', 'isplit.data.frame' were declared in NAMESPACE but not found Execution halted It looks like this package has a loading problem when not on .libPaths: see the messages for details. ** checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [15s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... [51s] NOTE Examples with CPU or elapsed time > 10s user system elapsed ewoc_simulation 1.65 0.01 17.4 ** running examples for arch 'x64' ... ERROR Running examples in 'ewoc-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: optimal_toxicity > ### Title: Percent of doses in relation the optimal toxicity interval > ### Aliases: optimal_toxicity > > ### ** Examples > > ## Don't show: > DLT <- 0 > dose <- 30 > step_zero <- ewoc_d1classic(DLT ~ dose, type = 'discrete', + theta = 0.33, alpha = 0.25, + min_dose = 0, max_dose = 100, + dose_set = seq(0, 100, 20), + rho_prior = matrix(1, ncol = 2, nrow = 1), + mtd_prior = matrix(1, ncol = 2, nrow = 1), + rounding = "nearest") Warning in limits_d1nocov(first_dose = first_dose, last_dose = last_dose, : 'first_dose' and 'last_dose' were defined as the first and last elements of 'dose_set', respectively. Compiling model graph Resolving undeclared variables Allocating nodes Graph information: Observed stochastic nodes: 1 Unobserved stochastic nodes: 2 Total graph size: 32 Initializing model > response_sim <- response_d1classic(rho = 0.05, mtd = 20, theta = 0.33, + min_dose = 10, max_dose = 50) > pdlt_sim <- pdlt_d1classic(rho = 0.05, mtd = 20, theta = 0.33, + min_dose = 10, max_dose = 50) > sim <- ewoc_simulation(step_zero = step_zero, + n_sim = 1, sample_size = 2, + alpha_strategy = "increasing", + response_sim = response_sim, + ncores = 2) Error in { : task 1 failed - "could not find function "feasibility"" Calls: ewoc_simulation ... ewoc_simulation.ewoc_d1classic -> %dopar% -> <Anonymous> Execution halted * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING, 2 NOTEs Any thoughts? Thank you, -- Márcio Diniz [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
