Hi again,
today I INSTALLED R-devel (2017-12-05 r73849) and updated all packages
> update.packages(checkBuilt = TRUE)
and rebuilt eha_2.5.1 and now all checks passed! Maybe the update of
packages was necessary.
On its way to CRAN now.
Göran
On 2017-12-05 21:51, Göran Broström wrote:
Hi,
I am checking my eha package with R-3.4.3:
goran@M6800:~/R$ R CMD check --as-cran eha_2.5.1.tar.gz
which results in
* DONE
Status: OK
Fine, but with R-devel (2017-12-04 r73829)
goran@M6800:~/R$ ~/src/R-devel/bin/R CMD check --as-cran eha_2.5.1.tar.gz
.........
* checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
...
*** caught segfault ***
address 0x1, cause 'memory not mapped'
Traceback:
1: .Call(C_stri_locate_all_regex, str, pattern, omit_no_match,
opts_regex)
2: stri_locate_all_regex(string, pattern, omit_no_match = TRUE,
opts_regex = opts)
3: stringr::str_locate_all(input, inline.code)
4: parse_inline(g, patterns)
5: FUN(X[[i]], ...)
6: lapply(groups, function(g) { block = grepl(chunk.begin, g[1]) if
(!set.preamble && !parent_mode()) { return(if (block) "" else
g) } if (block) { n = length(g) if (n >= 2 &&
grepl(chunk.end, g[n])) g = g[-n] g = strip_block(g,
patterns$chunk.code) params.src = if (group_pattern(chunk.begin))
{ stringr::str_trim(gsub(chunk.begin, "\\1", g[1])) }
else "" parse_block(g[-1], g[1], params.src) } else
parse_inline(g, patterns)})
7: split_file(lines = text)
8: process_file(text, output)
9: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet,
encoding = encoding)
10: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir =
globalenv())
11: vweave_rmarkdown(...)
12: engine$weave(file, quiet = quiet, encoding = enc)
13: doTryCatch(return(expr), name, parentenv, handler)
14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
15: tryCatchList(expr, classes, parentenv, handlers)
16: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir) find_vignette_product(name, by = "weave", engine =
engine)}, error = function(e) { stop(gettextf("processing vignette
'%s' failed with diagnostics:\n%s", file, conditionMessage(e)),
domain = NA, call. = FALSE)})
17: buildVignettes(dir = "/home/goran/R/eha.Rcheck/vign_test/eha")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault (core dumped)
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
So, can I send this version of eha to CRAN?
Göran Broström
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