On 03/06/2015 12:16 PM, Rik Verdonck wrote:
> Hi all,
>
>
>
>
> I am developing a package for the interpretation of mass spectrometry data,
> which can be found here: https://github.com/goat-anti-rabbit/labelpepmatch.R
If your vignette is not written in Sweave, you need to tell R what
package handles it. See the "Non-Sweave vignettes" section 1.4.2 in
Writing R Extensions.
Duncan Murdoch
> I wrote a vignette that compiles fine into a .html using knitr in Rstudio.
> The output line in the vignette.rmd file looks like :
>
> ??output: rmarkdown::html_vignette
>
> However, when I use
> devtools::install_github("goat-anti-rabbit/labelpepmatch.R") or
> devtools::install_github("goat-anti-rabbit/labelpepmatch.R",build_vignettes =
> TRUE), the package loads normally, but no vignette is found when using
> browseVignettes("labelpepmatch") or vignette("labelpepmatch").
>
> I don't really get this, because as far as I understood, shouldn't the
> package be able to build the vignette from scratch?
>
> I also tried with these lines for output:
>
> output:
> html_document:
> theme: readable
> pdf_document:
> highlight: default
> toc: yes
>
> And it nicely knits into example html and pdf files, but no real files are
> created in the labelpepmatch/vignettes directory. Any suggestions here?
>
>
> So: recap of my questions:
> 1. Should it be possible for the vignette to be built from scratch and if
> yes, what is missing in my package for this functionality to work?
> 2. How can I make knitr output a html AND pdf in my vignettes directory?
>
> Looking forward to your replies.
> Many, many thanks!
> Rik
>
>
>
> [[alternative HTML version deleted]]
>
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