I am still working on your suggestions. While doing so I found a more general concern.
I am now trapped in incompatible circular dependencies. I don't know how to resolve them. The immediate specific is that ggplot2::layer and latticeExtra::layer are incompatible. Due to these dependencies I don't think I have control over which one has precedence. I depend on lattice and latticeExtra and gridExtra. I import Hmisc and Rcmdr Hmisc Depends: lattice and ggplot2 Imports: latticeExtra, gridExtra gridExtra suggests ggplot2 and lattice Rcmdr imports abind, suggests e1071, Hmisc The message I am seeing with HH (which I cannot interpret by myself) Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : there is no package called 'abind' seems to be a consequence of importing Rcmdr. Since I do have this package the message is confusing at best. Can you rephrase the message? Perhaps by listing which specific line in which file is triggering it. I also sometime get a similar complaint about e1071 which I don't use at all but is suggested by Rcmdr. I also get a complaint about TeachingDemos, which I have but don't use in HH. I haven't spotted where that dependency is coming from. However I see that TeachingDemos suggests both lattice and ggplot2. Rich On Mon, May 25, 2015 at 3:44 AM, Uwe Ligges <lig...@statistik.tu-dortmund.de> wrote: > Two ideas: > > 1. Solve the first error at first: > > Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = > vI[[j]]) : > there is no package called 'abind' > Error: package or namespace load failed for 'HH' > Execution halted > > Looks like you forgot to declare abind as an Imports in your DESCRIPTION > file? > > > 2. If you still get the other problems, please make a version of your > package available so that someone else can check and debug this. > > Best, > Uwe Ligges > > > > > > On 25.05.2015 05:01, Richard M. Heiberger wrote: >> >> The problem is still there. I am working on both Windows and Macintosh. >> >> The packages I have check clean using R-3.1.2 on Windows. >> They "INSTALL --build" and "build" using 3.3.0-devl on Windows and 3.2.0 >> on Mac, >> >> I downloaded R-devel for Windows this afternoon and updated to Rtools33. >> I have attached two R CMD check log files with this combination >> * using R Under development (unstable) (2015-05-22 r68399) >> * using platform: i386-w64-mingw32 (32-bit) >> >> >> The 3.1-15 is the version currently on CRAN. >> It complains it can't find Hmisc. Hmisc is installed. >> The built package inside the Rcheck directory loads. >> Package check results on CRAN don't show this warning. >> >> >> The 3.1-17 is the version I am working on. >> It complains it can't find abind. abind is installed. >> It gives 6 versions of this message. >> Error in validObject(.Object) : >> invalid class "ObjectsWithPackage" object: superclass "atomicVector" >> not defined in the environment of the object's class >> I don't understand what is triggering them. >> The built package inside the Rcheck directory loads. >> >> On Sat, May 23, 2015 at 9:02 AM, Uwe Ligges >> <lig...@statistik.tu-dortmund.de> wrote: >>> >>> Can you try a more recent version of R-devel with all relevant packages >>> you >>> depend on re-installed? >>> >>> Looks like either a bug in that months old version of R-devel or an >>> inconsistancy of installed packages and the version of the methods >>> package >>> or so. >>> >>> Best, >>> Uwe Ligges >>> >>> >>> >>> >>> On 23.05.2015 05:29, Richard M. Heiberger wrote: >>>> >>>> >>>> followup. >>>> >>>> I backed up to R-3.1.2 and fixed the problems it found. >>>> Then I tried again with R-3.2.0 and I am still getting these messages >>>> >>>> Error in validObject(.Object) : >>>> invalid class "ObjectsWithPackage" object: superclass "atomicVector" >>>> not defined in the environment of the object's class >>>> Calls: <Anonymous> ... metaNameUndo -> new -> initialize -> initialize >>>> -> validObject >>>> Execution halted >>>> >>>> On Fri, May 22, 2015 at 8:08 PM, Richard M. Heiberger <r...@temple.edu> >>>> wrote: >>>>> >>>>> >>>>> I am updating the HH package and have series of messages that I don't >>>>> recognize. >>>>> >>>>> bash-3.2$ R CMD check HH2 >>>>> * using log directory >>>>> '/Users/rmh/WindowsC/HOME/rmh/HH-R.package/HH2.Rcheck' >>>>> * using R Under development (unstable) (2015-02-12 r67812) >>>>> * using platform: x86_64-apple-darwin13.4.0 (64-bit) >>>>> * using session charset: ASCII >>>>> * checking for file 'HH2/DESCRIPTION' ... OK >>>>> * checking extension type ... Package >>>>> * this is package 'HH' version '3.1-17' >>>>> * checking package namespace information ... OK >>>>> * checking package dependencies ... OK >>>>> * checking if this is a source package ... OK >>>>> * checking if there is a namespace ... OK >>>>> * checking for executable files ... OK >>>>> * checking for hidden files and directories ... NOTE >>>>> Found the following hidden files and directories: >>>>> .DS_Store >>>>> inst/.DS_Store >>>>> These were most likely included in error. See section 'Package >>>>> structure' in the 'Writing R Extensions' manual. >>>>> * checking for portable file names ... OK >>>>> * checking for sufficient/correct file permissions ... OK >>>>> * checking whether package 'HH' can be installed ... OK >>>>> * checking installed package size ... OK >>>>> * checking package directory ... OK >>>>> * checking DESCRIPTION meta-information ... OK >>>>> * checking top-level files ... OK >>>>> * checking for left-over files ... OK >>>>> * checking index information ... OK >>>>> * checking package subdirectories ... OK >>>>> * checking R files for non-ASCII characters ... OK >>>>> * checking R files for syntax errors ... OK >>>>> * checking whether the package can be loaded ... OK >>>>> * checking whether the package can be loaded with stated dependencies >>>>> ... >>>>> OK >>>>> * checking whether the package can be unloaded cleanly ... OK >>>>> * checking whether the namespace can be loaded with stated dependencies >>>>> ... OK >>>>> * checking whether the namespace can be unloaded cleanly ... OK >>>>> * checking dependencies in R code ... NOTE >>>>> Error in validObject(.Object) : >>>>> invalid class "ObjectsWithPackage" object: superclass >>>>> "atomicVector" >>>>> not defined in the environment of the object's class >>>>> Execution halted >>>>> >>>>> I have two questions about it. >>>>> 1. What is it checking? There are no words in the message that >>>>> indicate which of my >>>>> functions is being looked at. >>>>> >>>>> I am getting 6 of these. They are all identically worded. sometimes >>>>> they are >>>>> NOTE ERROR WARNING >>>>> >>>>> Thanks >>>>> Rich >>>>> >>>>> 2. How can I run R CMD check, or its components, in a way that will >>>>> stop >>>>> and >>>>> let me investigate from the point? I am looking for the equivalent of >>>>> the R option >>>>> option(error=recover) >>>> >>>> >>>> >>>> ______________________________________________ >>>> R-package-devel@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/r-package-devel >>>> >>> > ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel