On 31.05.2010 17:55, Uwe Ligges wrote:
On 31.05.2010 14:03, mau...@alice.it wrote:
I recently updated R 2.10.1 Patched (2010-02-20 r51163)
This morning I reinstalled biomaRt using biocLite.
Now I can no more connect to biomaRt and even the following
instruction is hanging for a while until
the same error message pops up.
listMarts()
Error in value[[3L]](cond) :
Request to BioMart web service failed. Verify if you are still
connected to the internet. Alternatively the BioMart web service is
temporarily down.
I checked my command syntax and got the following message:
library(help=biomaRt)
Warning messages:
1: package 'JavaGD' was built under R version 2.9.0 and help may not
work correctly
2: package 'Biobase' was built under R version 2.9.0 and help may not
work correctly
3: package 'Biostrings' was built under R version 2.9.0 and help may
not work correctly
4: package 'IRanges' was built under R version 2.9.0 and help may not
work correctly
5: package 'CORNA' was built under R version 2.9.0 and help may not
work correctly
6: package 'GEOquery' was built under R version 2.9.0 and help may not
work correctly
7: package 'microRNA' was built under R version 2.9.0 and help may not
work correctly
8: package 'Rlibstree' was built under R version 2.9.0 and help may
not work correctly
I am stuck.
Which packages am I supposed to install again ? Maybe shall I get rid
of R 2.10.1 Patched
and restart from scratch ?
1. If you upgraded, why to R-2.10.1. given R-2.11.1 has been released
today? Hence my recommedndation is to go ahead for R-2.11.1
2. After strating R say
update.packages(checkBuilt=TRUE)
and all your outdated packages will be updated for the current version
of R.
And DO NOT cross post (as I did while responding without paying
attention to the list of CCs).
Uwe Ligges
Uwe Ligges
Thank you in advance.
Maura
tutti i telefonini TIM!
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