Dear List, I'd like to call pyhton function from within R. I tried installing the latest version of RSPython:
wget http://www.omegahat.org/RSPython/RSPython_0.7-1.tar.gz R CMD INSTALL --clean RSPython_0.7-1.tar.gz I get a compile error (posted below). Did anyone else run against this ? Is there a solution ? checking for python... /usr/bin/python Python version 2.6 Using threads checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed R version 2 Looking for libR.so in lib/ configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makevars config.status: creating cleanup config.status: creating inst/scripts/RPython.csh config.status: creating inst/scripts/RPython.bsh ** libs gcc -std=gnu99 -I/usr/share/R/include -I../inst/include -I/usr/include/python2.6 -D_R_=1 -DUSE_R=1 -fpic -g -O2 -c GeneralConverters.c -o GeneralConverters.o In file included from ../inst/include/UserConverters.h:4, from GeneralConverters.c:1: ../inst/include/RPythonModule.h:4:20: error: Python.h: No such file or directory In file included from ../inst/include/UserConverters.h:4, from GeneralConverters.c:1: ../inst/include/RPythonModule.h:14: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token ../inst/include/RPythonModule.h:15: error: expected ‘)’ before ‘*’ token ../inst/include/RPythonModule.h:17: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token In file included from GeneralConverters.c:1: ../inst/include/UserConverters.h:13: error: expected ‘)’ before ‘*’ token ../inst/include/UserConverters.h:15: error: expected ‘)’ before ‘*’ token ../inst/include/UserConverters.h:17: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘FromTargetConverterMatch’ ../inst/include/UserConverters.h:18: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘FromTargetConverter’ ../inst/include/UserConverters.h:24: error: expected specifier-qualifier-list before ‘FromPythonConverterMatch’ ../inst/include/UserConverters.h:35: error: expected declaration specifiers or ‘...’ before ‘PyClassObject’ In file included from GeneralConverters.c:1: ../inst/include/UserConverters.h:37: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token ../inst/include/UserConverters.h:40: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘ToTargetConverter’ ../inst/include/UserConverters.h:46: error: expected specifier-qualifier-list before ‘ToPythonConverter’ ../inst/include/UserConverters.h:63: error: expected ‘)’ before ‘*’ token ../inst/include/UserConverters.h:64: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘*’ token ../inst/include/UserConverters.h:74: error: expected ‘)’ before ‘Rf_match’ ../inst/include/UserConverters.h:78: error: expected declaration specifiers or ‘...’ before ‘ToPythonConverter’ GeneralConverters.c: In function ‘removeFromTargetConverterByIndex’: GeneralConverters.c:23: error: ‘RSFromPythonConverter’ has no member named ‘next’ GeneralConverters.c:29: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:36: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:36: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c: In function ‘removeToTargetConverterByIndex’: GeneralConverters.c:53: error: ‘RSToPythonConverter’ has no member named ‘next’ GeneralConverters.c:59: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c:66: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c:66: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c: In function ‘removeFromTargetConverterByDescription’: GeneralConverters.c:85: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:85: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:87: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:94: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c: In function ‘RPython_removeConverter’: GeneralConverters.c:128: warning: implicit declaration of function ‘free’ GeneralConverters.c:128: warning: incompatible implicit declaration of built-in function ‘free’ GeneralConverters.c:135: error: ‘RSToTargetConverter’ has no member named ‘description’ GeneralConverters.c:138: warning: incompatible implicit declaration of built-in function ‘free’ GeneralConverters.c: In function ‘getNumConverters’: GeneralConverters.c:160: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:166: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c: In function ‘RPython_getConverterDescriptions’: GeneralConverters.c:198: error: ‘RSFromTargetConverter’ has no member named ‘description’ GeneralConverters.c:202: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:204: error: ‘RSToTargetConverter’ has no member named ‘description’ GeneralConverters.c:205: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c: In function ‘fromTargetConverterDescription’: GeneralConverters.c:223: error: ‘RSFromTargetConverter’ has no member named ‘description’ GeneralConverters.c:224: error: ‘RSFromTargetConverter’ has no member named ‘description’ GeneralConverters.c: In function ‘addFromTargetConverter’: GeneralConverters.c:240: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:246: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:248: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c:251: error: ‘RSFromTargetConverter’ has no member named ‘next’ GeneralConverters.c: At top level: GeneralConverters.c:260: error: expected ‘)’ before ‘Rf_match’ GeneralConverters.c: In function ‘R_addFromPythonConverter’: GeneralConverters.c:282: error: ‘FromPythonConverterMatch’ undeclared (first use in this function) GeneralConverters.c:282: error: (Each undeclared identifier is reported only once GeneralConverters.c:282: error: for each function it appears in.) GeneralConverters.c:282: error: ‘m’ undeclared (first use in this function) GeneralConverters.c:283: error: ‘FromPythonConverter’ undeclared (first use in this function) GeneralConverters.c:283: error: ‘cvt’ undeclared (first use in this function) GeneralConverters.c:286: error: expected expression before ‘)’ token GeneralConverters.c:287: error: expected expression before ‘)’ token GeneralConverters.c:289: warning: implicit declaration of function ‘addFromTargetConverterInfo’ GeneralConverters.c: At top level: GeneralConverters.c:298: error: expected declaration specifiers or ‘...’ before ‘ToTargetConverter’ GeneralConverters.c: In function ‘addToTargetConverterInfo’: GeneralConverters.c:303: error: ‘RSToTargetConverter’ has no member named ‘converter’ GeneralConverters.c:303: error: ‘converter’ undeclared (first use in this function) GeneralConverters.c:304: error: ‘RSToTargetConverter’ has no member named ‘autoArray’ GeneralConverters.c:305: error: ‘RSToTargetConverter’ has no member named ‘userData’ GeneralConverters.c:306: error: ‘RSToTargetConverter’ has no member named ‘description’ GeneralConverters.c:307: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c: In function ‘addToTargetConverter’: GeneralConverters.c:322: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c:326: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c:328: error: ‘RSToTargetConverter’ has no member named ‘next’ GeneralConverters.c:330: error: ‘RSToTargetConverter’ has no member named ‘next’ make: *** [GeneralConverters.o] Error 1 ERROR: compilation failed for package ‘RSPython’ ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
