Dear Wu Gong and Peter Ehlers,
thank you very much for your help debugging my script.
Now I have a general following up question:
Is there a straightforward way to rearrange the following dataset so
that all first letters of each column will be combined in one column,
all the second letters in a second column, all the third ones in a
third column and so on, resulting in 7 columns,
i.e. for the first individual (GM920222) GGGG AAAA TTTT TTAA GGGG CCAA
CCCC ?
Thank you very much,
Laetitia
SampleID A1 A2 A3 A4
GM920222 GATTGCC GATTGCC GATAGAC GATAGAC
GM930040 GTCATCA GAGTGCA ACTATAA GATTGCC
GM930040 GTCATCA GAGTGCA ACTATAA GATTGCC
GM960023 GATTGCC GTCATCA GATTGCC GATTGCC
GM920224 ACTAGAA GTCATCA GTCATCA ACTAGAA
GM920224 ACTAGAA GTCATCA GTCATCA ACTAGAA
GM920034 GATTGCC GTCATCA GATTGCA GATTGCA
GM920096 GATTGCC GATTGCC GATTGCA GATTGCC
GM930029 GTCATCA GATTGCC GTCATCA GATTGCC
GM940031 GATTGCC GAGTGCA GATTGCA ACTAGAA
GM960028 GATTGCC GAGTGCA GATTGCA ACTAGAA
GM980007 GTCATCA GATTGCC ACTTGAA GTCATCA
GM970009 ACTAGAA GTCAGAA GTCAGCA ACTAGCA
GM930026 ACTAGAA GAGTGCA GAGTGCA ACTAGAA
GM920031 GATTGCC GTCATCA GATTGCC GATTGCC
GM990105 GATTGCC GATTGCC GTCAGCA GTCAGCA
GM920202 GATTGCC GATTGCC GATTGCC GATTGCC
GM920089 GAGTGCA GTCAGAA ACTATCA GATTGCC
GM980051 ACTAGAA ACTAGAA GATAGCC GATAGCC
GM930109 GTCATCA GAGTGCA GTTTTAA ACTAGAA
GM940039 GTCATCA GAGTGCA GTTTGCC ACTTTCA
GM050099 GAGTGCA GTCAGAA GTTATCC ACTTTCA
GM050099 GAGTGCA GTCAGAA GTTATCC ACTTTCA
GM030005 ACTAGAA GAGTGCA ACTAGAA ACTAGAA
GM050009 ACTAGAA GATTGCC GATTGCC ACTAGAA
GM990027 GATTGCC GAGTGCA GATTGCA GATTGCC
GM990066 GATTGCC GTCATCA GTCATCA GATTGCC
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
