Hi:
If you intend to use your preferred solution, then I would suggest that you
increase the size of
the plotted points relative to the thickness of the adjoining lines; in your
last line of code, something
like
xyplot(y~x, group=g, data=tmp2, type="b", cex = 2, pch = 16)
This way, it will be easier to spot where data values are missing.
HTH,
Dennis
On Thu, May 6, 2010 at 10:44 AM, Tao Shi <shi...@hotmail.com> wrote:
>
> I just found out that my "does this by default" statement (by which I was
> referring to the ability to automatically connect two points with a NA in
> the middle in a time series) is wrong! Actually, all plotting functions,
> i.e. plot, matplot and xyplot, don't plot NAs. The solution I came up with
> is convert the data to "long" table, remove NAs, and then use xyplot. See
> example below:
>
> set.seed(1234)
> a=b=matrix(rnorm(9), 3,3)
> b[2,2]=NA
> matplot(a, type="b")
> matplot(b, type="b") ## I want the two "2" connected!
> matplot(b, type="l") ## Now my data for the second column are missing from
> the graph
>
>
> ## my solution
> tmp1 <- data.frame(g=rep(1:3,each=3), x=rep(1:3,3), y=c(b))
> xyplot(y~x, group=g, data=tmp1, type="b", pch=c("1","2","3")) ## there is
> still no line connecting two "2"s.
>
> tmp2 <- tmp1[!is.na(tmp1$y),]
> xyplot(y~x, group=g, data=tmp2, type="b")
> ## this is what I want, b/c it's easier for me to keep track of both trend
> and missing values. The original post was really asking whether a simple
> change of some parameters in matplot can do this. Now, I guess not.
>
> ...Tao
>
>
> ----------------------------------------
> > From: maech...@stat.math.ethz.ch
> > Date: Thu, 6 May 2010 18:34:22 +0200
> > To: shi...@hotmail.com
> > CC: ggrothendi...@gmail.com; r-help@r-project.org
> > Subject: Re: [R] 'matplot' for matrix with NAs: broken lines
> >
> >>>>>> "TS" == Tao Shi
> >>>>>> on Wed, 5 May 2010 20:11:26 +0000 writes:
> >
> > TS> Thanks, Gabor! So, there is no way I can change some graphic
> parameters in 'matplot' to get this?
> >
> >
> > TS> I forgot to mention that I purposely use type="b", so I know where
> the missing data are. With imputed data, either using "b" or "l", there is
> no way to keep track of NAs. Plus, in my real data sometimes there is only
> one non-missing value in a particular column and na.approx can't work (well
> I could selectively impute the NAs ... )
> >
> > TS> So far, my best solution to this is to use "xyplot". It does this by
> default, but of course I need some data manipulation first.
> >
> > "does this by default" meaning what?
> > I don't think it does impute missing, does it?
> >
> > Can you elaborate, using your example (below)?
> >
> > I found Gabor's answer appropriate,
> > I really cannot see why matplot() should behave differently here...
> >
> > ----
> >
> > Martin Maechler
> >
> >
> >
> >
> > TS> ----------------------------------------
> >>> From: ggrothendi...@gmail.com
> >>> Date: Wed, 5 May 2010 15:45:44 -0400
> >>> Subject: Re: [R] 'matplot' for matrix with NAs: broken lines
> >>> To: shi...@hotmail.com
> >>> CC: r-help@r-project.org
> >>>
> >>> Try this:
> >>>
> >>> library(zoo)
> >>> matplot(na.approx(b), type = "l")
> >>>
> >>> On Wed, May 5, 2010 at 2:30 PM, Tao Shi wrote:
> >>>>
> >>>> Hi list,
> >>>>
> >>>> I know that points involving NAs are not plotted in 'matplot', but
> when I plot them as lines, I still want the lines to connect all the points
> (i.e. not broken where there are NAs). Please see the example below. How can
> I achieve this in 'matplot'? If I can't, any good alternatives so I don't
> have to use 'plot' + 'lines' and loop through all the columns.
> >>>>
> >>>> Many thanks!
> >>>>
> >>>> ...Tao
> >>>>
> >>>>> set.seed(1234)
> >>>>> a=b=matrix(rnorm(9), 3,3)
> >>>>> b[2,2]=NA
> >>>>> matplot(a, type="b")
> > TS> [[elided Hotmail spam]]
> >>>>> matplot(b, type="l") ## Now my data for the second column are missing
> from the graph
> >>>>
> >>>>
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