Thanks Martin, your reply was extremely helpful. It took me a bit of time to figure out what TEXINPUTS are and where they should be specify, but it is working now. Just for reference, I had to include an "export TEXINPUTS" statement in my .bashrc for pdflatex to work in a command line, and add a path in the TEXINPUTS environment variable in Kile Tools > Configure Kile > Latex > General.
Sebastien On Wed, Mar 17, 2010 at 8:00 PM, Martin Morgan <mtmor...@fhcrc.org> wrote: > I don't know Kile details, but arrange for pdflatex to be invoked as > > R CMD pdflatex > > or for your TEXINPUTS environment variable to include the output > suggested by > > R CMD env |grep TEXINPUTS > > Martin > > On 03/17/2010 04:48 PM, Sébastien Bihorel wrote: > > Dear R-users, > > > > I want to give a try to Sweave and Latex but I am having some problems > > compiling my .Rnw files within Kile. I have followed the recommendations > > given in http://tolstoy.newcastle.edu.au/R/e5/help/08/10/4277, but they > do > > not seem to address my particular problem. > > > > I am using R 2.11.0 and Kile v 2.0.83 on an OpenSUSE11.2 installation > (KDE > > 4.3 environment). According to the log (see below), Kile is unable to > locate > > the Sweave.sty file (which is actually stored in > /usr/lib/R/share/texmf/). > > > > Any advise would be welcome. > > > > Sebastien > > > > > > > > ***** > > > > ***** Sweave output: > > > > ***** cd "/home/sebastien/Documents/scaRabee/scaRabee_latex" > > > > ***** sweave -ld scaRabee.Rnw > > > > ***** > > > > Run Sweave and postprocess with LaTeX directly from the command line > > > > - create PDF via pdflatex > > > > R version 2.11.0 Under development (unstable) (2010-02-17 r51148) > > > > Copyright (C) 2010 The R Foundation for Statistical Computing > > > > ISBN 3-900051-07-0 > > > > R is free software and comes with ABSOLUTELY NO WARRANTY. > > > > You are welcome to redistribute it under certain conditions. > > > > Type 'license()' or 'licence()' for distribution details. > > > > Natural language support but running in an English locale > > > > R is a collaborative project with many contributors. > > > > Type 'contributors()' for more information and > > > > 'citation()' on how to cite R or R packages in publications. > > > > Type 'demo()' for some demos, 'help()' for on-line help, or > > > > 'help.start()' for an HTML browser interface to help. > > > > Type 'q()' to quit R. > > > > > Sweave(file='scaRabee.Rnw'); > > > > Writing to file scaRabee.tex > > > > Processing code chunks ... > > > > You can now run LaTeX on 'scaRabee.tex' > > > > > > > > > LaTeX on produced TeX files > > > > - using hardcoded list of 'pdfLaTeX and friends' commands > > > > PDF creation > > > > This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) > > > > %&-line parsing enabled. > > > > entering extended mode > > > > (./scaRabee.tex > > > > LaTeX2e <2005/12/01> > > > > Babel <v3.8l> and hyphenation patterns for english, usenglishmax, > > dumylang, noh > > > > yphenation, german-x-2008-06-18, ngerman-x-2008-06-18, ancientgreek, > ibycus, > > ar > > > > abic, basque, bulgarian, catalan, pinyin, coptic, croatian, czech, > danish, > > dutc > > > > h, esperanto, estonian, farsi, finnish, french, galician, german, > ngerman, > > mono > > > > greek, greek, hungarian, icelandic, indonesian, interlingua, irish, > italian, > > la > > > > tin, mongolian, mongolian2a, bokmal, nynorsk, polish, portuguese, > romanian, > > rus > > > > sian, sanskrit, serbian, slovak, slovenian, spanish, swedish, turkish, > > ukenglis > > > > h, ukrainian, uppersorbian, welsh, loaded. > > > > (/usr/share/texmf/tex/latex/base/article.cls > > > > Document Class: article 2005/09/16 v1.4f Standard LaTeX document class > > > > (/usr/share/texmf/tex/latex/base/size10.clo)) > > > > (/usr/share/texmf/tex/latex/ucs/ucs.sty > > > > (/usr/share/texmf/tex/latex/ucs/data/uni-global.def)) > > > > (/usr/share/texmf/tex/latex/base/inputenc.sty > > > > (/usr/share/texmf/tex/latex/ucs/utf8x.def)) > > > > (/usr/share/texmf/tex/latex/amsmath/amsmath.sty > > > > For additional information on amsmath, use the `?' option. > > > > (/usr/share/texmf/tex/latex/amsmath/amstext.sty > > > > (/usr/share/texmf/tex/latex/amsmath/amsgen.sty)) > > > > (/usr/share/texmf/tex/latex/amsmath/amsbsy.sty) > > > > (/usr/share/texmf/tex/latex/amsmath/amsopn.sty)) > > > > (/usr/share/texmf/tex/latex/amsfonts/amsfonts.sty) > > > > (/usr/share/texmf/tex/latex/amsfonts/amssymb.sty) > > > > (/usr/share/texmf/tex/latex/base/fontenc.sty) > > > > (/usr/share/texmf/tex/latex/graphics/graphicx.sty > > > > (/usr/share/texmf/tex/latex/graphics/keyval.sty) > > > > (/usr/share/texmf/tex/latex/graphics/graphics.sty > > > > (/usr/share/texmf/tex/latex/graphics/trig.sty) > > > > (/usr/lib/texmf/tex/latex/config/graphics.cfg) > > > > (/usr/share/texmf/tex/latex/pdftex-def/pdftex.def))) > > > > ! LaTeX Error: File `Sweave.sty' not found. > > > > Type X to quit or <RETURN> to proceed, > > > > or enter new name. (Default extension: sty) > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > -- > Martin Morgan > Computational Biology / Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N. > PO Box 19024 Seattle, WA 98109 > > Location: Arnold Building M1 B861 > Phone: (206) 667-2793 > [[alternative HTML version deleted]]
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
