Friends,
I tried to install ncdf package in ubuntu with the following command.
R CMD INSTALL
--configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include
-with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz
The installation was stopped throwing the following error. I tried to google
it but didnt find any solution. someone kindly write me what is going wrong.
** libs
gcc -std=gnu99 -I/usr/share/R/include -I/apps/netcdf/4.0.1/gcc/include
-fpic -g -O2 -c ncdf.c -o ncdf.o
ncdf.c: In function R_nc_get_vara_double:
ncdf.c:196: warning: format %u expects type unsigned int, but argument 3
has type size_t
ncdf.c:202: warning: format %u expects type unsigned int, but argument 3
has type size_t
ncdf.c: In function R_nc_get_vara_int:
ncdf.c:239: warning: format %u expects type unsigned int, but argument 3
has type size_t
ncdf.c:245: warning: format %u expects type unsigned int, but argument 3
has type size_t
ncdf.c: In function R_nc_get_vara_text:
ncdf.c:296: warning: format %u expects type unsigned int, but argument 3
has type size_t
ncdf.c:302: warning: format %u expects type unsigned int, but argument 3
has type size_t
ncdf.c: In function R_nc_ttc_to_nctype:
ncdf.c:424: warning: implicit declaration of function exit
ncdf.c:424: warning: incompatible implicit declaration of built-in function
exit
ncdf.c: In function R_nc_put_vara_double:
ncdf.c:582: warning: format %d expects type int, but argument 3 has type
size_t
ncdf.c:585: warning: format %d expects type int, but argument 3 has type
size_t
gcc -std=gnu99 -I/usr/share/R/include -I/apps/netcdf/4.0.1/gcc/include
-fpic -g -O2 -c ncdf2.c -o ncdf2.o
gcc -std=gnu99 -I/usr/share/R/include -I/apps/netcdf/4.0.1/gcc/include
-fpic -g -O2 -c ncdf3.c -o ncdf3.o
ncdf3.c: In function R_nc_get_vara_charvarid:
ncdf3.c:221: warning: assignment discards qualifiers from pointer target
type
ncdf3.c: In function R_nc_get_vara_numvarid:
ncdf3.c:267: warning: assignment discards qualifiers from pointer target
type
gcc -std=gnu99 -shared -o ncdf.so ncdf.o ncdf2.o ncdf3.o
-L/apps/netcdf/4.0.1/gcc/lib -lnetcdf -L/usr/lib64/R/lib -lR
/usr/bin/ld: /apps/netcdf/4.0.1/gcc/lib/libnetcdf.a(attr.o): relocation
R_X86_64_32 against `.rodata' can not be used when making a shared object;
recompile with -fPIC
/apps/netcdf/4.0.1/gcc/lib/libnetcdf.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make: *** [ncdf.so] Errore 1
ERROR: compilation failed for package ncdf
* Removing /usr/local/lib/R/site-library/ncdf
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