On 03/04/2010 10:30 PM, mahalakshmi sivamani wrote:
Hi all ,
I have one query.
i have list of some .cel files. in my program i have to mention the path of
these .cel files
part of my program is,
rna.data<-exprs(justRMA(filenames=file.names, celfile.path=*datadir*,
sampleNames=sample.names, phenoData=pheno.data,
cdfname=cleancdfname(hg18_Affymetrix U133A)))
in the place of "datadir" i have to mention the character string of the
directory of these .cel files. I don't know how to give the path for all
these files.
i set the path as given below,
rna.data<-exprs(justRMA(filenames=file.names, celfile.path="*D:/MONO1.CEL"
"D:/MONO2.CEL" "D:/MONO3.CEL" "D:/MACRO1.CEL" "D:/MACRO2.CEL"
"D:/MACRO3.CEL"*,sampleNames=sample.names, phenoData=pheno.data,
cdfname=cleancdfname(hg18_Affymetrix U133A)))
it shows this error,
Error: unexpected string constant in
"rna.data<-exprs(justRMA(filenames=file.names, celfile.path="D:/MONO1"
"D:/MONO2""
Hi Mahalakshmi,
If you want to pass more than one string as an argument, you must pass
them as a character vector.
celfile.path=c("D:/MONO1.CEL","D:/MONO2.CEL","D:/MONO3.CEL",
"D:/MACRO1.CEL","D:/MACRO2.CEL","D:/MACRO3.CEL")
Although this is not guaranteed to make your function work correctly.
Jim
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
