On Jan 29, 2010, at 11:11 AM, eric lee wrote:

Hello,

Can you tell me what R function to use to do a two-sample chi-squared
test?  I want to see if two distributions are significantly different
from each other, and I don't specify the theoretical distribution of
either.  For example, I have the following fake count data:

x <- sample(1:10,50,replace=TRUE)
y <- sample(1:10,100,replace=TRUE)

I saw chisq.test in the stats package, but that looks like a
one-sample test.

Nope. You do need to supply it with the right organization of data, though. In your case that would be a 2 x 10 or a 10 x 2 matrix (so (2-1)x(10-1)=9 d.f)

?table
?matrix


I'm running version 2.7.2 on windows xp.

Probably has very little bearing on this problem, but that is considered to be badly outdated in 2010.

Thanks.
--

David Winsemius, MD
Heritage Laboratories
West Hartford, CT

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