Hi, I have a list of IPI gene IDs. I want to find out whether there is a package which can map the gene ontology to these IPIs, and plot the pie chart to demonstrate the molecular function distributions.
The input is like the following gene IPI IDs: IPI:IPI00008860.1|SWISS-PROT:Q9BXJ4-1|TREMBL:Q542Y2|ENSEMBL:ENSP00000231338;EN IPI:IPI00019922.5|SWISS-PROT:Q8N0Y2-1|TREMBL:Q53F81|ENSEMBL:ENSP00000338860;ENSP00000375594|REFSEQ:NP_060807|H-INV:HIT000028861|VEGA:OTTHUMP00000078377 Tax_Id=9606 Gene_Symbol=ZN IPI:IPI00647423.2|SWISS-PROT:Q8N819-1|REFSEQ:NP_001073870|VEGA:OTTHUMP00000076687 Tax_Id=9606 Gene_Symbol=FLJ40125 Isoform 1 of IPI:IPI00219000.2|SWISS-PROT:P27658|TREMBL:Q53XI6|ENSEMBL:ENSP00000261037|REFS IPI:IPI00291878.4|SWISS-PROT:P35247|ENSEMBL:ENSP00000361366|REFSEQ:NP_003010|H-INV:HIT000039466|VEGA:OTTHUMP00000019944 IPI:IPI00013945.1|SWISS-PROT:P07911-1|TREMBL:Q8NHW8|ENSEMBL:ENSP00000306279|RE IPI:IPI00000634.1|SWISS-PROT:Q16204|TREMBL:Q6GSG7|ENSEMBL:ENSP00000263102|REFS I want to plot the pie chart of these gene distribution in the GO molecular function as a pie chart. An example is shown in the following link http://www.proteomesci.com/content/7/1/6/figure/F2?highres=y Can some one help? Thanks much in advance. Merry Christmas!! ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
