Is texi2dvi in your PATH? What happens if you open a CMD window and
type texi2dvi at the prompt?
--sundar
On Thu, Nov 26, 2009 at 6:14 AM, Wolfgang Raffelsberger <wr...@igbmc.fr> wrote:
> Dear all,
>
> I can't get texi2dvi working right. Basically I'd like to convert a .lex to
> .pdf without having to fiddle with the issue Sweave.sty not being in my
> current directory (as this was sugested in other posts on this list).
>
> When I'm in the R-Gui I can get the help via
> ?texi2dvi
> (So I conclude its installed.)
>
> However, when I try to use it to concert a .tex to .pdf I get trouble ...
>
> For example :
> A)
> The file "test02.r" contains :
> Sweave("Sweave_test01.rnw")
> library(tools)
> texi2dvi("Sweave_test01.tex", pdf =T)
>
> Now, when I run on the linux command line :
> R --vanilla -q < test02.r
>
> I get :
>> Sweave("Sweave_test01.rnw")
> Writing to file Sweave_test01.tex
> Processing code chunks ...
> 1 : term hide (label=chunk_ini)
> 2 : term verbatim eps pdf (label=Fig01)
> 3 : term tex (label=packageVersionInfo)
> Loading required package: xtable
>
> You can now run LaTeX on 'Sweave_test01.tex'
>> library(tools)
>> texi2dvi("Sweave_test01.tex", pdf =T)
> Error in texi2dvi("Sweave_test01.tex", pdf = T) :
> Running 'texi2dvi' on 'Sweave_test01.tex' failed.
> Messages:
> sh: texi2dvi: command not found
> Execution halted
>
>
> B)
> In a previous message on this list I found the following command line(s)
> suggested, but I my case it won't work
>
> star5_R_test_> R CMD texi2dvi --help
> /usr/local/lib64/R/bin/Rcmd: line 62: exec: texi2dvi: not found
>
> similarly, when execute (as sugested) I get the same error message
>
> star5_R_test_> R CMD texi2dvi -p Sweave_test01.tex
> /usr/local/lib64/R/bin/Rcmd: line 62: exec: texi2dvi: not found
>
>
> I don't understand how can a command can be present (= installed) and still
> not being found as the error messages suggest ?
>
> For completeness :
>> sessionInfo()
> R version 2.10.0 (2009-10-26)
> x86_64-unknown-linux-gnu
>
> locale:
> [1] C
>
> attached base packages:
> [1] stats graphics grDevices utils datasets methods base
> other attached packages:
> [1] xtable_1.5-6 mouse4302probe_2.5.0 AnnotationDbi_1.8.1
> [4] mouse4302cdf_2.5.0 MASS_7.3-3 fdrtool_1.2.5 [7]
> limma_3.2.1 affyPLM_1.22.0 preprocessCore_1.8.0
> [10] gcrma_2.18.0 affy_1.24.2 Biobase_2.6.0
> loaded via a namespace (and not attached):
> [1] Biostrings_2.14.3 DBI_0.2-4 IRanges_1.4.4 RSQLite_0.7-3
> [5] affyio_1.14.0 splines_2.10.0 tools_2.10.0
>
>
>
> Thank's in advance,
> Wolfgang
>
>
> Charles C. Berry a écrit :
>>
>> On Tue, 8 Sep 2009, Welma Pereira wrote:
>>
>>> Hello, I have the following makefile. The problem is that the
>>> bibliography
>>> doesn t work. Any help would be appreciated! I really don t don t what to
>>> do..:-(
>>>
>>>
>>>
>>> # The sources of the report (tex, Rnw and other files (e.g. bib, idx))
>>> TEX_CMPS = Report problem
>>> RNW_CMPS = prop1 prop2 ExeExps
>>> OTHER = Report.bib
>>>
>>> # The name of the report to produce
>>> all: Report.pdf
>>>
>>> code: $(RNW_CMPS:=.R)
>>>
>>> clean:
>>> rm -f *.log *.dvi *~
>>>
>>> # On what does the report depends?
>>> Report.pdf: $(TEX_CMPS:=.tex) $(RNW_CMPS:=.tex) ${OTHER} makefile
>>> TEXINPUTS=${TPUTS} pdflatex $<
>>> TEXINPUTS=${TPUTS} pdflatex $<
>>
>> IIRC
>>
>> R CMD texi2dvi -p <target.tex>
>>
>> takes care of finding sweave.sty and running latex thru all the iterations
>> needed to build cross-references and a usable pdf.
>>
>> Try
>>
>> R CMD texi2dvi --help
>>
>> at the shell prompt.
>>
>> HTH,
>>
>> Chuck
>>
>>>
>>> rm *.log
>>> # mv *.aux $(dir $<)
>>>
>>> # How to build the tex files from the Rnw (Sweave) files
>>> %.tex: %.Rnw
>>> echo "library(utils); options(width=60); Sweave('$<')" | ${R_PRG}
>>> --no-save --vanilla
>>> mv $(notdir $*.tex) $(dir $<)
>>>
>>>
>>> # How to build the R code files from the Rnw (Sweave) files
>>> %.R: %.Rnw
>>> echo "library(utils); Stangle('$<')" | ${R_PRG} --no-save --vanilla
>>>
>>> %.bib:
>>> TEXINPUTS=${TPUTS} pdflatex $<
>>> bibtex $<
>>>
>>> %.aux:
>>> TEXINPUTS=${TPUTS} pdflatex $<
>>> bibtex $<
>>>
>>> %.idx:
>>> TEXINPUTS=${TPUTS} pdflatex $<
>>> makeindex $<
>>>
>>> cheers!
>>>
>>> [[alternative HTML version deleted]]
>>>
>>> ______________________________________________
>>> R-help@r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>
>> Charles C. Berry (858) 534-2098
>> Dept of Family/Preventive
>> Medicine
>> E mailto:cbe...@tajo.ucsd.edu UC San Diego
>> http://famprevmed.ucsd.edu/faculty/cberry/ La Jolla, San Diego 92093-0901
>>
>> ______________________________________________
>
> . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
> Wolfgang Raffelsberger, PhD
> Laboratoire de BioInformatique et Génomique Intégratives
> IGBMC, 1 rue Laurent Fries, 67404 Illkirch Strasbourg, France
> Tel (+33) 388 65 3300 Fax (+33) 388 65 3276
> wolfgang.raffelsberger (at) igbmc.fr
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
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