Hi, I am using the function heatmap(stats) to draw a microarray heatmap, columns are samples and rows are gene features.
I did a 2D clustering during the heatmap drawing. The features and samples indeed cluster into several blocks both vertically and horizontally. I can get the index of re-ordered rows and columns after the heatmap drawing by typing the the return variable of the heatmap function. However, I cannot separate these index by the the dendro tree. All the indexes labeled at the bottom and right of the plot all jammed together. I cannot by looking at the plot to find where the borders are. Can someone help? Essentially I want the dendro tree of the genes which are grouped after the clustering so that, e.g., I want to check whether genes clustered together are in the same pathway etc. Thanks in advance. -- Waverley @ Palo Alto ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
