Hi all,
I am new to python, R and rpy2. I having few errors when I am using
'fisher.test' function where I am struck now. Please help to fix these bugs.
My code for fisher.test goes this way
*from rpy2 import *
import rpy2.robjects as robjects
def fisherExact(a,b,c,d):
v = [a,b,c,d]
m = robjects.r['matrix'](v,2,2)
s = robjects.r['fisher.test'](m)
return s
*
Here the value of a=0,b=1,c=0 and d=1. so the matrix m should be like this
[,1] [,2]
[1,] 0 0
[2,] 1 1
But I am getting an error like this
*File "/usr/lib64/python2.6/site-packages/rpy2/robjects/__init__.py", line
422, in __call__
res = super(RFunction, self).__call__(*new_args, **new_kwargs)
rinterface.RRuntimeError: Error in function (x, y = NULL, workspace = 2e+05,
hybrid = FALSE, control = list(), :
all entries of 'x' must be nonnegative and finite*
clearly every element of matrix m is +ve but I don't know why I am getting
this error. I am using python 2.6,R-core-2.9.2-1 and rpy2.
Please help me in this regard.
Thanks,
Bhanu.
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