swertie <v_coudrain <at> voila.fr> writes: > > Hello, I performed a Mantel test and plotted communitiy similarities. I > would like to add a least square line. I thought about using abline taking > as slope the r-statistic of the Mantel test and calculating the y-intercept > analytically. Is this method correct? Is there any function for this > calculation? Thank you
If you have Mantel statistic for two dist() objects (as produced by dist(), as.dist() or compatible functions), you can just use abline(lm(ydist ~ xdist)) because dist object is a vector with some extra attributes. Of course, this does not quite make sense, since distances do not have least squares fit in any reasonable sense. People do this all the time, though (ecologists, and aquatic ecologists in particular, I mean). Cheers, Jari Okanen ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
