Re: [R] error when installing rjags

Tobias Verbeke Tue, 21 Jul 2009 13:52:21 -0700

Hi Mark,

What command did you use exactly to install the package ?


The following blog post by Yu-Sung Su

http://yusung.blogspot.com/2009/01/install-jags-and-rjags-in-fedora.html

indicates that some configure.args might need to be set to
succesfully install the package (at least on Fedora 10)

install.packages("rjags",configure.args="--with-jags-include=/usr/local/include/JAGS--with-jags-lib=/usr/local/lib/JAGS--with-jags-modules=/usr/local/lib/JAGS/modules")


The fact that in the error message complains some files are
not found might have to do with one of the appropriate paths
not being picked up.

HTH,
Tobias

markle...@verizon.net wrote:

   Hi All: I get the following error when trying to install the rjags package.
   I've installed the
   jags software and I'm using Fedora 10.0 and my sessionInfo is at the bottom
   of this email.
   I'm also sorry if this email ends up having control A's all over it. I still
   haven't figured how to fix that. Thanks.
   [1] "LOADING MASS LIBRARY"
   checking for prefix by checking for jags... /usr/bin/jags
   configure: creating ./config.status
   config.status: creating src/Makevars
   configure: creating ./config.status
   config.status: creating src/Makevars
   config.status: creating R/unix/zzz.R
   g++ -m32 -I/usr/include/R -I/usr/include/JAGS -I/usr/local/includeÂ Â Â
   -fpicÂ    -O2  -g  -pipe  -Wall  -Wp,-D_FORTIFY_SOURCE=2  -fexceptions
   -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
   -fasynchronous-unwind-tables -c jags.cc -o jags.o
   jags.cc:8:21: error Console.h No such file or directory
   jags.cc:9:24: error: util/naing.h: No such file or directory
   jags.cc:20: error: 'SArray' was not declared in this scope
   jags.cc:21: error expected ',' or ';' before { token
   R version 2.9.0 (2009-04-17)
   i386-redhat-linux-gnu
   locale:
   LC_CTYPE=en_US.utf8;LC_NUMERIC=C;LC_TIME=en_US.utf8;LC_COLLATE=en_US.utf8;LC
   _MONETARY=C;LC_MESSAGES=en_US.utf8;LC_PAPER=en_US.utf8;LC_NAME=C;LC_ADDRESS=
   C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.utf8;LC_IDENTIFICATION=C
   attached base packages:
   [1] datasetsÂ  utilsÂ Â Â Â  statsÂ Â Â Â  graphicsÂ  grDevices methodsÂ Â
   baseÂ Â Â Â
   other attached packages:
   Â [1] gsubfn_0.3-8Â Â Â Â Â Â  proto_0.3-8Â Â Â Â Â Â Â  latticeExtra_0.5-4
   RColorBrewer_1.0-2    filehash_2.0-1Â Â Â Â     reshape_0.8.2Â Â Â Â Â
   plyr_0.1.8Â Â Â Â Â Â Â Â  rOpenBUGS_0.0-1Â Â Â  caret_4.19Â Â Â Â Â Â Â
   [10]        dyn_0.2-8Â Â Â Â Â Â Â Â Â        coda_0.13-4Â Â Â Â Â Â Â
   lattice_0.17-22Â Â Â  zoo_1.5-5Â Â Â Â Â Â Â Â Â  chron_2.3-30Â Â Â Â Â Â
   MASS_7.2-46Â Â Â Â Â Â
   loaded via a namespace (and not attached):
   [1] grid_2.9.0
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Re: [R] error when installing rjags

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