hi,
first plot command and legend commands are working but lines command
is not working i dont know how it happening so. can u please help.
best regards
deepak
On Tue, Jul 14, 2009 at 10:32 AM, Duncan Murdoch<murd...@stats.uwo.ca> wrote:
> On 7/14/2009 10:07 AM, deepak m r wrote:
>>
>> Hi,
>> I am not an expert to debug the R can u please help.
>
> No, because you haven't given us anything to work with. Simplify your
> example to something we can run, explain what you see and what you think you
> should see, and then maybe one of us could help.
>
> Duncan Murdoch
>
>> best regards
>> deepak
>>
>> On Tue, Jul 14, 2009 at 10:06 AM, deepak m r<deepak...@gmail.com> wrote:
>>>
>>> Hi,
>>>
>>>
>>> On Tue, Jul 14, 2009 at 9:38 AM, Duncan Murdoch<murd...@stats.uwo.ca>
>>> wrote:
>>>>
>>>> On 7/14/2009 8:56 AM, deepak m r wrote:
>>>>>
>>>>> Hi,
>>>>> Empty plot is getting i dont know why. can u please clarify how
>>>>> can i use Print function instead of plot function.
>>>>
>>>> You need print() if you are using grid-based graphics (lattice,
>>>> ggplot2,...)
>>>> in a script. You are using classic graphics so it should not be
>>>> necessary.
>>>>
>>>> If you are getting blank plots when you shouldn't, that's a bug. If you
>>>> can
>>>> put together a reproducible example that shows its a bug in R, rather
>>>> than a
>>>> bug in your script, it will likely be fixed fairly quickly.
>>>>
>>>> Duncan Murdoch
>>>>
>>>>
>>>>> best regards
>>>>> deepak
>>>>>
>>>>> On Tue, Jul 14, 2009 at 7:48 AM, Petr PIKAL<petr.pi...@precheza.cz>
>>>>> wrote:
>>>>>>
>>>>>> Hi
>>>>>>
>>>>>> For this type of problems I do multipage pdf.
>>>>>>
>>>>>> pdf("file", ....)
>>>>>> for (i in ...) {
>>>>>> do all stuff including plot
>>>>>> }
>>>>>> dev.off()
>>>>>>
>>>>>> and then check the plots afterwards. Recently there was some post
>>>>>> about
>>>>>> how to wait but you do not want only wait you want also to
>>>>>> interactively
>>>>>> change plotting parameters, won't you.
>>>>>>
>>>>>> cat("\n","Enter x","\n") # prompt
>>>>>> x=scan(n=1) # read 1 line from console
>>>>>>
>>>>>> this construction print something on console and reads one line from
>>>>>> console. There are also some packages which leave you choose from
>>>>>> several
>>>>>> options. I think in car and randomForest are such routines so you
>>>>>> could
>>>>>> check how it is done.
>>>>>>
>>>>>> Regards
>>>>>> Petr
>>>>>>
>>>>>> r-help-boun...@r-project.org napsal dne 14.07.2009 13:17:01:
>>>>>>
>>>>>>> hi,
>>>>>>> is there any wait function in R. I am running one R script to plot
>>>>>>> many graphs it is in the for loop. its showing no error but its not
>>>>>>> plotting well I think i can solve this problem with a wait function.
>>>>>>> Please help me in this regards. If u need any clarification about
>>>>>>> programme. u can find the script below.
>>>>>>>
>>>>>>> best regards,
>>>>>>> Deepak.M.R
>>>>>>> Biocomputing Group
>>>>>>> University of Bologana.
>>>>>>>
>>>>>>>
>>>>>>> #!/usr/bin/R
>>>>>>> s<-c
>>>>>>>
>>>>>>
>>>>>>
>>>>>> ("GG","GA","GV","GL","GI","GM","GF","GW","GP","GS","GT","GC","GY","GN","GQ","GD","GE","GK","GR","GH","AA","AV","AL","AI","AM","AF","AW","AP","AS","AT","AC","AY","AN","AQ","AD","AE","AK","AR","AH","VV","VL","VI","VM","VF","VW","VP","VS","VT","VC","VY","VN","VQ","VD","VE","VK","VR","VH","LL","LI","LM","LF","LW","LP","LS","LT","LC","LY","LN","LQ","LD","LE","LK","LR","LH","II","IM","IF","IW","IP","IS","IT","IC","IY","IN","IQ","ID","IE","IK","IR","IH","MM","MF","MW","MP","MS","MT","MC","MY","MN","MQ","MD","ME","MK","MR","MH","FF","FW","FP","FS","FT","FC","FY","FN","FQ","FD","FE","FK","FR","FH","WW","WP","WS","WT","WC","WY","WN","WQ","WD","WE","WK","WR","WH","PP","PS","PT","PC","PY","PN","PQ","PD","PE","PK","PR","PH","SS","ST","SC","SY","SN","SQ","SD","SE","SK","SR","SH","TT","TC","TY","TN","TQ","TD","TE","TK","TR","TH","CC","CY","CN","CQ","CD","CE","CK","CR","CH","YY","YN","YQ","YD","YE","YK","YR","YH","NN","NQ","ND","NE","NK","NR","NH","QQ","QD","QE","QK","QR","QH","DD","D
>
> E"!
>>>>
>>>>>>> ,"DK","DR","DH","EE","EK","ER","EH","KK","KR","KH","RR","RH","HH")
>>>>>>> for(t in 1:length(s))
>>>>>>> {
>>>>>>>
>>>>>>
>>>>>>
>>>>>> a<-read.table(paste("../All_alpha_proteins/alp",s[t],"mean.sat",sep=""),header=T)
>>>>>>>
>>>>>>> attach (a)
>>>>>>> names(a)
>>>>>>> al<-1:length(paste("alp",s[t],"_mean",sep=""))
>>>>>>>
>>>>>>
>>>>>>
>>>>>> b<-read.table(paste("../All_beta_proteins/bet",s[t],"mean.sat",sep=""),header=T)
>>>>>>>
>>>>>>> attach(b)
>>>>>>> names(b)
>>>>>>> bl<-1:length(paste("bet",s[t],"_mean",sep=""))
>>>>>>> p<-read.table(paste("../Alpha_and_beta_proteins_a+b/apb",s
>>>>>>> [t],"mean.sat",sep=""),header=T)
>>>>>>> attach(p)
>>>>>>> names(p)
>>>>>>> pl<-1:length(paste("apb",s[t],"_mean",sep=""))
>>>>>>> o<-read.table(paste("../Alpha_and_beta_proteins_aorb/aob",s
>>>>>>> [t],"mean.sat",sep=""),header=T)
>>>>>>> attach(o)
>>>>>>> names(o)
>>>>>>> ol<-1:length(paste("aob",s[t],"_mean",sep=""))
>>>>>>> postscript(file=paste("Mean_",s[t],"_Plot.ps",sep=""))
>>>>>>> plot(0,xlim=c(0,160),ylim=c(0,70),main=paste("Mean Distance Plot for
>>>>>>> ",s[t]," Rsidue pair",sep=""),ylab="Mean Distance in
>>>>>>> Angstrom",xlab="Residue Seperation Number")
>>>>>>> lines(al,paste("alp",s[t],"_mean",sep=""),col="blue",lty = 2)
>>>>>>> lines(bl,paste("bet",s[t],"_mean",sep=""),col="yellow",lty = 2)
>>>>>>> lines(pl,paste("apb",s[t],"_mean",sep=""),col="red",lty = 2)
>>>>>>> lines(ol,paste("aob",s[t],"_mean",sep=""),col="green",lty = 2)
>>>>>>> legend("topleft",c("Alpha Proteins","Beta Proteins","Alpha +
>>>>>>> Beta","Alpha or Beta"),lty =
>>>>>>> c(2,2,2,2),col=c("blue","yellow","red","green"))
>>>>>>> dev.off()
>>>>>>> }
>>>>>>>
>>>>>>> ______________________________________________
>>>>>>> R-help@r-project.org mailing list
>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>>>> PLEASE do read the posting guide
>>>>>>
>>>>>> http://www.R-project.org/posting-guide.html
>>>>>>>
>>>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>>>
>>>>>>
>>>>>
>>>>> ______________________________________________
>>>>> R-help@r-project.org mailing list
>>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>>> PLEASE do read the posting guide
>>>>> http://www.R-project.org/posting-guide.html
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>
>>>>
>>>
>
>
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