Kevin W wrote:
Frank,
Your template is very interesting. The "pretty-ifing" of the left arrow
and tilde in the input chunk has the unfortunate side-effect of making
the code non-paste-able into R.
Kevin,
I haven't needed to do that. It's best to make the .Rnw file available
to others, or to tangle the file to isolate the R code.
I seem to recall that your reports used to include the latex source code
as an appendix. Maybe one option could be to include an appendix with
I only do that for stat computing presentations not for routine reports.
the results of Stangle applied to the .Rnw file, formatted as plain
text. This would create a concise collection of all the necessary code
to reproduce the results.
I'll probably go the separate file route using Stangle.
Frank
Just brainstorming here....
Kevin Wright
On Sun, Jun 14, 2009 at 11:29 PM, Frank E Harrell Jr
<f.harr...@vanderbilt.edu <mailto:f.harr...@vanderbilt.edu>> wrote:
Dear Group,
I have made significant improvements to our Sweave template, have
made the template self-contained (i.e., you can run it yourself and
it will find the datasets it needs), and have included the output
pdf file. This is at http://biostat.mc.vanderbilt.edu/SweaveTemplate
. You will see in the pdf file the enhancements in how R code is
pretty-printed, and I have added an example where some R function
output is suppressed from the listing that Sweave typesets. The new
template also suggests how to auto-document the computing
environment at the end of the report, and how to properly reference
R and add-on packages. Figures are centered (but not as nicely as
Marc Schwartz' approach) and better defaults are used for axis label
and tick mark label positioning.
Thanks to Romain Francois for providing the trick of suppressing
parts of R output (replacing it with ...) and Peter Ruckdeschel for
his excellent SweaveListingUtils package. Suggestions for further
improvements are welcomed.
Frank
--
Frank E Harrell Jr Professor and Chair School of Medicine
Department of Biostatistics Vanderbilt University
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--
Frank E Harrell Jr Professor and Chair School of Medicine
Department of Biostatistics Vanderbilt University
______________________________________________
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