check option 'warn' in the on-line help file of ?options(), e.g., you can use something like this:

op <- options(warn = (-1)) # suppress warnings

cor.test(c(1,2,3,3,4,5), c(1,2,3,3,4,5),  method = "spearman")

options(op) # reset the default value, if you want


I hope it helps.

Best,
Dimitris


Daren Tan wrote:
I would like to turn off the warnings from cor.test while retaining
exact=NULL. Is that possible ?

cor.test(c(1,2,3,3,4,5), c(1,2,3,3,4,5),  method = "spearman")

        Spearman's rank correlation rho

data:  c(1, 2, 3, 3, 4, 5) and c(1, 2, 3, 3, 4, 5)
S = 0, p-value < 2.2e-16
alternative hypothesis: true rho is not equal to 0
sample estimates:
rho
  1

Warning message:
In cor.test.default(c(1, 2, 3, 3, 4, 5), c(1, 2, 3, 3, 4, 5), method =
"spearman") :
  Cannot compute exact p-values with ties

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--
Dimitris Rizopoulos
Assistant Professor
Department of Biostatistics
Erasmus University Medical Center

Address: PO Box 2040, 3000 CA Rotterdam, the Netherlands
Tel: +31/(0)10/7043478
Fax: +31/(0)10/7043014

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