David Winsemius wrote: > help.search did not offer any clues. Using Baron's search page, I got > reference to r-help entries from 2004, but looking at the current > documentation , I see no such function. I am wondering if the name of the > function was changed in later versions of the package and you are mixing old > documentation or examples with a newer installation of that package? > > Here is a 2005 version of the package documentation and it does have that > function: > http://phase.hpcc.jp/mirrors/stat/R/CRAN/doc/packages/Geneland.pdf > > Perhaps you want the MCMC function? > > Description > Markov Chain Monte-Carlo inference under various models > > Usage > MCMC( coordinates=NULL, genotypes,## ploidy=2, dominance="Codominant", > allele.numbers, > path.mcmc, # path to output directory > # hyper-prior parameters > rate.max,delta.coord=0,shape1=2,shape2=20, npopmin=1,npopinit,npopmax, > # dimensions > nb.nuclei.max, > # options in mcmc computations > nit,thinning=1,freq.model="Uncorrelated", varnpop=TRUE, spatial=TRUE, > jcf=TRUE, filter.null.alleles=TRUE, prop.update.cell=0.1, > write.rate.Poisson.process=FALSE, write.number.nuclei=TRUE, > write.number.pop=TRUE, write.coord.nuclei=TRUE, write.color.nuclei=TRUE, > write.freq=TRUE, write.ancestral.freq=TRUE, write.drifts=TRUE, > write.logposterior=TRUE, write.loglikelihood=TRUE, write.true.coord=TRUE, > write.size.pop=FALSE, miss.loc)
Hello, You might reach a broader range of Geneland users by sending your post to R-sig-genetics: https://stat.ethz.ch/mailman/listinfo/r-sig-genetics Cheers, Thibaut. -- ###################################### Dr Thibaut JOMBART MRC Centre for Outbreak Analysis and Modelling Department of Infectious Disease Epidemiology Imperial College - Faculty of Medicine St Marys Campus Norfolk Place London W2 1PG United Kingdom Tel. : 0044 (0)20 7594 3658 jomb...@biomserv.univ-lyon1.fr http://biomserv.univ-lyon1.fr/%7Ejombart/ http://adegenet.r-forge.r-project.org/ [[alternative HTML version deleted]]
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
