-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 "Steven McKinney" <smckin...@bccrc.ca> writes:
> This may just be version incompatibilities. > > A similar discussion recently transpired on > r-sig-mixed-models, see e.g. > > https://stat.ethz.ch/pipermail/r-sig-mixed-models/2008q4/001526.html Steven, That did sound promising. I ran ,---- | sudo R CMD REMOVE -l /usr/lib/R/site-library/ lme4 `---- and the files disappeared. Then I ran ,---- | > install.packages("lme4") `---- - From inside R, selected a mirror in WA (USA), and let it run. I got ,---- | trying URL 'http://cran.fhcrc.org/src/contrib/lme4_0.999375-28.tar.gz' | Content type 'application/x-gzip' length 678443 bytes (662 Kb) | opened URL | ================================================== | downloaded 662 Kb | | * Installing *source* package 'lme4' ... | ** libs | gcc -std=gnu99 -I/usr/share/R/include -I"/home/bill/R/i486-pc-linux-gnu-library/2.7/Matrix/include" -fpic -g -O2 -c init.c -o init.o | gcc -std=gnu99 -I/usr/share/R/include -I"/home/bill/R/i486-pc-linux-gnu-library/2.7/Matrix/include" -fpic -g -O2 -c lmer.c -o lmer.o | gcc -std=gnu99 -I/usr/share/R/include -I"/home/bill/R/i486-pc-linux-gnu-library/2.7/Matrix/include" -fpic -g -O2 -c local_stubs.c -o local_stubs.o | gcc -std=gnu99 -shared -o lme4.so init.o lmer.o local_stubs.o -llapack -lblas -lgfortran -lm -L/usr/lib/R/lib -lR | ** R | ** data | ** moving datasets to lazyload DB | ** inst | ** preparing package for lazy loading | Loading required package: Matrix | Loading required package: lattice | | Attaching package: 'Matrix' | | | The following object(s) are masked from package:stats : | | xtabs | | Creating a new generic function for "coef" in "lme4" | Creating a new generic function for "confint" in "lme4" | Creating a new generic function for "plot" in "lme4" | Creating a new generic function for "formula" in "lme4" | Creating a new generic function for "anova" in "lme4" | Creating a new generic function for "deviance" in "lme4" | Creating a new generic function for "fitted" in "lme4" | Creating a new generic function for "logLik" in "lme4" | Creating a new generic function for "predict" in "lme4" | Creating a new generic function for "residuals" in "lme4" | Creating a new generic function for "resid" in "lme4" | Creating a new generic function for "simulate" in "lme4" | Creating a new generic function for "model.frame" in "lme4" | Creating a new generic function for "model.matrix" in "lme4" | Creating a new generic function for "terms" in "lme4" | Creating a new generic function for "vcov" in "lme4" | Creating a new generic function for "with" in "lme4" | Creating a new generic function for "as.data.frame" in "lme4" | Creating a new generic function for "xyplot" in "lme4" | Creating a new generic function for "densityplot" in "lme4" | Creating a new generic function for "qqmath" in "lme4" | ** help | >>> Building/Updating help pages for package 'lme4' | Formats: text html latex example | BIC text html latex | Dyestuff text html latex example | HPDinterval text html latex | Pastes text html latex example | Penicillin text html latex example | VarCorr-class text html latex | VarCorr text html latex example | VerbAgg text html latex example | cake text html latex example | cbpp text html latex example | fixef text html latex example | lmList-class text html latex | lmList text html latex example | lmer text html latex example | mcmcsamp text html latex example | mer-class text html latex example | merMCMC-class text html latex example | ranef text html latex example | refit text html latex example | sleepstudy text html latex example | ** building package indices ... | * DONE (lme4) | | The downloaded packages are in | /tmp/RtmpZmO6Lb/downloaded_packages | > display() | Error: could not find function "display" `---- The two unexpected things were the fact it seemed to load Matrix after getting lme4 -- did that mess anything up? -- and "The following object(s) are masked from package:stats : xtabs" statement, which seemed odd but I don't know what it means. Did I misunderstand something? Thanks, Bill - -- Bill Harris http://facilitatedsystems.com/weblog/ Facilitated Systems Everett, WA 98208 USA http://facilitatedsystems.com/ phone: +1 425 337-5541 -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.9 (GNU/Linux) iEYEARECAAYFAklMbCwACgkQ3J3HaQTDvd8J3ACfeqC34KAip6FjwfadlAcgH3gK PyEAniLW19bO/XetmDq9v4VzlMuM/StV =ICba -----END PGP SIGNATURE----- ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
