On Thu, Dec 4, 2008 at 5:21 AM, Rainer M Krug <[EMAIL PROTECTED]> wrote: > Did you make any progress in using R in the SGE / OpenMPI environment? > I am asking, because I am struggling with the same problem. Using qsub > does not give me an interactive session which I can use (wherefore I > don't see a way of using RMPISNOW and getMPIcluster()) and the > spawning (makeMPIcluster()) when R is running only yields slave > processes on the node on which the master is running. > I have the feeling, that I am missing something really basic - but what is > it...
No, I haven't gotten things to work. Even under openmpi without SGE, I have R crashes on a regular basis when using Rmpi-0.5.5, so I haven't really pursued it further. Sean > On Thu, Oct 9, 2008 at 3:18 PM, Sean Davis <[EMAIL PROTECTED]> wrote: >> We have spent some time setting up Sun Grid Engine and OpenMPI on a >> group of linux boxes. I have created a parallel environment and >> everything seems to be working. I have Rmpi 0.5.5-5 installed on all >> machines. I would like to start an interactive R session using, say, >> 8 processors and then start the Rmpi cluster. I haven't been able to >> find what needs to be done in order to accomplish this task. Is >> anyone using R in such an environment that can point me in the right >> direction? >> >> Thanks, >> Sean >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > > > -- > Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation > Biology, UCT), Dipl. Phys. (Germany) > > Centre of Excellence for Invasion Biology > Faculty of Science > Natural Sciences Building > Private Bag X1 > University of Stellenbosch > Matieland 7602 > South Africa > ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
