This is a follow-up on the discussion originally posted on the R-devel list (
http://tolstoy.newcastle.edu.au/R/e4/devel/08/06/1901.html ), as I have
encountered the exact same issue mentioned in Martin's email. Here is a
simplified version of my problem:
##=================================================================
## I created a package, say, "tmpA", with a NAMESPACE with Depend: and Imports:
org.Hs.eg.db and in a new session of R
> library(tmpA)
> foo
function ()
{
require("org.Hs.eg.db")
get("A GO TERM", org.Hs.egGO2ALLEGS)
}
> foo()
Error in as.environment(pos) : invalid object for 'as.environment'
##=================================================================
I fixed the problem by changing "get" explicitly to "AnnotationDbi::get". I'm
just wondering what was the final decision on the problem and if there are more
elegant ways of handling this.
Thanks,
...Tao
_________________________________________________________________
50F681DAD532637!5295.entry?ocid=TXT_TAGLM_WL_domore_092008
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