(1) ...need to speed up a monte-carlo sampling...any suggestions about
how I can get R to use all 8 cores of a mac pro would be most useful
and very appreciated...
(2) spent the last few hours trying to get pnmath to compile under os-
x 10.5.4...
using gcc version 4.2.1 (Apple Inc. build 5553) as downloaded from
CRAN, xcode 3.0...
...xcode 3.1 installed over top of above after compilation
failure...adverse effect, produced error on "-arch"
any suggestion about how to get pnmath to compile would be most
useful...I'm not sure it will even speed things up but thought I
would try...
pnmath failed:
...
gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-
version-min=10.4 -std=gnu99 -dynamiclib -Wl,-
headerpad_max_install_names -mmacosx-version-min=10.4 -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/
lib -o pnmath.so bd0.o beta.o chebyshev.o choose.o d1mach.o dbeta.o
dbinom.o dcauchy.o dchisq.o dexp.o df.o dgamma.o dgeom.o dhyper.o
dlnorm.o dlogis.o dnbeta.o dnbinom.o dnchisq.o dnf.o dnorm.o dnt.o
dpois.o dt.o dunif.o dweibull.o fmax2.o fmin2.o ftrunc.o gamma.o
gamma_cody.o i1mach.o imax2.o imin2.o lbeta.o lgamma.o lgammacor.o
mlutils.o pbeta.o pbinom.o pcauchy.o pchisq.o pexp.o pf.o pgamma.o
pgeom.o phyper.o plnorm.o plogis.o pnbeta.o pnbinom.o pnchisq.o pnf.o
pnmath.o pnorm.o pnt.o polygamma.o ppois.o pt.o ptukey.o punif.o
pweibull.o qbeta.o qbinom.o qcauchy.o qchisq.o qexp.o qf.o qgamma.o
qgeom.o qhyper.o qlnorm.o qlogis.o qnbeta.o qnbinom.o qnchisq.o qnf.o
qnorm.o qnt.o qpois.o qt.o qtukey.o qunif.o qweibull.o sign.o
stirlerr.o toms708.o -lgomp -F/Library/Frameworks/R.framework/.. -
framework R -Wl,-framework -Wl,CoreFoundation
ld: warning, duplicate dylib /Developer/SDKs/MacOSX10.4u.sdk/usr/local/
lib/libgcc_s.1.dylib
** arch - ppc
...
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-
version-min=10.4 -std=gnu99 -dynamiclib -Wl,-
headerpad_max_install_names -mmacosx-version-min=10.4 -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/
lib -o pnmath.so bd0.o beta.o chebyshev.o choose.o d1mach.o dbeta.o
dbinom.o dcauchy.o dchisq.o dexp.o df.o dgamma.o dgeom.o dhyper.o
dlnorm.o dlogis.o dnbeta.o dnbinom.o dnchisq.o dnf.o dnorm.o dnt.o
dpois.o dt.o dunif.o dweibull.o fmax2.o fmin2.o ftrunc.o gamma.o
gamma_cody.o i1mach.o imax2.o imin2.o lbeta.o lgamma.o lgammacor.o
mlutils.o pbeta.o pbinom.o pcauchy.o pchisq.o pexp.o pf.o pgamma.o
pgeom.o phyper.o plnorm.o plogis.o pnbeta.o pnbinom.o pnchisq.o pnf.o
pnmath.o pnorm.o pnt.o polygamma.o ppois.o pt.o ptukey.o punif.o
pweibull.o qbeta.o qbinom.o qcauchy.o qchisq.o qexp.o qf.o qgamma.o
qgeom.o qhyper.o qlnorm.o qlogis.o qnbeta.o qnbinom.o qnchisq.o qnf.o
qnorm.o qnt.o qpois.o qt.o qtukey.o qunif.o qweibull.o sign.o
stirlerr.o toms708.o -lgomp -F/Library/Frameworks/R.framework/.. -
framework R -Wl,-framework -Wl,CoreFoundation
ld: warning in /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/
libgomp.dylib, file is not of required architecture
ld: warning, duplicate dylib /Developer/SDKs/MacOSX10.4u.sdk/usr/local/
lib/libgcc_s.1.dylib
ld: in /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libstdc++.
6.dylib, file is not of required architecture
collect2: ld returned 1 exit status
make: *** [pnmath.so] Error 1
chmod: /Library/Frameworks/R.framework/Resources/library/pnmath/libs/
ppc/*: No such file or directory
** Removing '/Library/Frameworks/R.framework/Resources/library/pnmath'
ERROR: compilation failed for package 'pnmath'
>
pnmath0 failed with the same first error; the second error was:
...
gcc -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -mmacosx-
version-min=10.4 -std=gnu99 -dynamiclib -Wl,-
headerpad_max_install_names -mmacosx-version-min=10.4 -undefined
dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/
lib -o pnmath0.so bd0.o beta.o chebyshev.o choose.o d1mach.o dbeta.o
dbinom.o dcauchy.o dchisq.o dexp.o df.o dgamma.o dgeom.o dhyper.o
dlnorm.o dlogis.o dnbeta.o dnbinom.o dnchisq.o dnf.o dnorm.o dnt.o
dpois.o dt.o dunif.o dweibull.o fmax2.o fmin2.o ftrunc.o gamma.o
gamma_cody.o i1mach.o imax2.o imin2.o lbeta.o lgamma.o lgammacor.o
mlutils.o pbeta.o pbinom.o pcauchy.o pchisq.o pexp.o pf.o pgamma.o
pgeom.o phyper.o plnorm.o plogis.o pnbeta.o pnbinom.o pnchisq.o pnf.o
pnmath1.o pnorm.o pnt.o polygamma.o ppois.o pt.o ptukey.o punif.o
pweibull.o qbeta.o qbinom.o qcauchy.o qchisq.o qexp.o qf.o qgamma.o
qgeom.o qhyper.o qlnorm.o qlogis.o qnbeta.o qnbinom.o qnchisq.o qnf.o
qnorm.o qnt.o qpois.o qt.o qtukey.o qunif.o qweibull.o sign.o
stirlerr.o toms708.o workers1.o -lpthread -F/Library/Frameworks/
R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning, duplicate dylib /Developer/SDKs/MacOSX10.4u.sdk/usr/local/
lib/libgcc_s.1.dylib
ld: in /Developer/SDKs/MacOSX10.4u.sdk/usr/local/lib/libstdc++.
6.dylib, file is not of required architecture
collect2: ld returned 1 exit status
make: *** [pnmath0.so] Error 1
** Removing '/Library/Frameworks/R.framework/Resources/library/pnmath0'
chmod: /Library/Frameworks/R.framework/Resources/library/pnmath0/libs/
ppc/*: No such file or directory
ERROR: compilation failed for package 'pnmath0'
--
Eric Rupley
University of Michigan, Museum of Anthropology
1109 Geddes Ave, Rm. 4013
Ann Arbor, MI 48109-1079
[EMAIL PROTECTED]
+1.734.276.8572
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