Hi, All;
I tried to install exon.pmcdf_1.1.tar.gz package using install.packages()
but it didn't with the following messages:
> install.packages('/Users/thchung/Downloads/exon.pmcdf_1.1.tar.gz',
repos=NULL)
Error in gzfile(file, "r") : cannot open the connection
In addition: Warning message:
In gzfile(file, "r") :
cannot open compressed file 'exon.pmcdf_1.1.tar.gz/DESCRIPTION', probable
reason 'No such file or directory'
> sessionInfo()
R version 2.7.2 beta (2008-08-16 r46368)
i386-apple-darwin9.4.0
locale:
C
attached base packages:
[1] splines tools stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] exonmap_1.6.05 plier_1.10.0 RMySQL_0.6-0
[4] DBI_0.2-4 RColorBrewer_1.0-2 simpleaffy_2.16.0
[7] gcrma_2.12.1 matchprobes_1.12.0 genefilter_1.20.0
[10] survival_2.34-1 affy_1.18.2 preprocessCore_1.2.1
[13] affyio_1.8.0 Biobase_2.0.1
loaded via a namespace (and not attached):
[1] AnnotationDbi_1.2.2 RSQLite_0.6-9 annotate_1.18.0
Surprisingly, the R CMD INSTALL mechanism worked:
BiobankMacBookPro:Downloads thchung$ R CMD INSTALL exon.pmcdf_1.1.tar.gz
* Installing to library '/Library/Frameworks/R.framework/Resources/library'
* Installing *source* package 'exon.pmcdf' ...
** R
** data
** help
>>> Building/Updating help pages for package 'exon.pmcdf'
Formats: text html latex example
exon.pmcdf text html latex
geometry text html latex example
** building package indices ...
* DONE (exon.pmcdf)
Can anyone tell me what the problem is? Thanks in advance,
Tae-Hoon
--
Tae-Hoon Chung
Korea Centers for Disease Control & Prevention (KCDC)
Korea National Institute of Health
Center for Genome Sciences :: Biobank Team
(T) +82-2-380-2252
(F) +82-2-354-1078
(M) +82-10-3511-1012
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