Hi,
In Windows, I follow a method with customized library locations that has worked
for me when upgrading to new R versions. I have not been able to follow the
same method in Ubuntu. I would like to have help. Let me explain.
In windows, I add the following line:
.libPaths(c(“C:/Rownlib”,”C:/R/R-4.5.0/library”))
in the file C:/R/R-4.5.0/etc/Rprofile.site
I have my own list of packages in the Rownlib folder and the packages that come
with the R installation for the latest version in the second folder. When
upgrading to a new R version, I just change the 2nd library location to that
for the updated R version.
I am not able to follow the same method for ubuntu. I get:
> .libPaths()
[1] "/usr/lib/R/library" "/usr/local/lib/R/site-library"
"/usr/lib/R/site-library"
I don’t understand the reason why the ubuntu R version has the 2nd and 3rd
“site-library” locations. Can somebody explain?
I tried to add a new library location with
.libPaths(new="/home/rvi/Rownlib")
This did not succeed in adding the new library.
I then added the line:
.libPaths(c("/home/rvi/Rownlib","/usr/lib/R/library" ))
in the Rprofile.site file after running:
sudo gedit /usr/lib/R/etc/Rprofile.site
Even this made no difference.
I noticed then that ubuntu has another file ~ etc/Renviron (this seems to be
absent on windows). This perhaps has priority over what is in Rprofile.site.
I see the following in Renviron:
R_LIBS_USER=${R_LIBS_USER:-'%U'}
R_LIBS_SITE=${R_LIBS_SITE:-'/usr/local/lib/R/site-library:%S'}
If this is the way to go, I would like to have help in modifying these lines to
include the location, "/home/rvi/Rownlib", as the 1st library location.
Apart from a solution, I would also appreciate explanations for why the library
system in ubuntu is structured in the way it is.
Thanks, Ravi
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