It's a microarray data set, so I don't think you would want to apply an RNA-seq pipeline. You'd be better off applying a normalization appropriate for this type of microarray data.
HTH, Peter On Sun, Apr 2, 2023 at 11:09 PM Anas Jamshed <anasjamshed1...@gmail.com> wrote: > > I want to get the count matrix of genes from > https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146049. Is it > possible for GSE146049? After getting counts, I want to do TMM > normalization. > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
